BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905806
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35860.1 | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-bind... 641 0.0
AT2G04720.1 | Symbols: | pseudogene, GTP-binding protein -rela... 207 8e-53
> AT4G35860.1 | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-binding
2 | chr4:16986840-16989047 REVERSE LENGTH=1122
Length=1122
Score = 641 bits (347), Expect = 0.0
Identities = 543/639 (85%), Gaps = 7/639 (1%)
Strand=Plus/Plus
Query 1 ATGTCATACGACTATCTGTTCAAATACATAATCATCGGAGACACAGGTGTGGGAAAAACG 60
||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 209 ATGTCTTACGATTATCTCTTCAAGTACATAATCATCGGAGACACAGGTGTGGGAAAATCG 268
Query 61 TGCCTTCTTCTACAATTTACTGACAAGAGATTCCAACCAGTCCACGATCTAACCATTGGT 120
|| || ||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 269 TGTCTGCTTCTGCAATTTACTGATAAGAGGTTCCAACCAGTCCACGATCTCACCATTGGT 328
Query 121 GCCGGGTTCGGTGATCGAATGGTCACCGTCGATGGTCGGTCTATAAAACTTCAAATTTGG 180
| | |||||||| ||| ||||||||||||||||| || | || ||||| |||||||||
Sbjct 329 GTTGAGTTCGGTGCTCGGATGGTCACCGTCGATGGACGCCCCATCAAACTCCAAATTTGG 388
Query 181 GACACCGCTGGACAAGAGA-CATTTAGATCCATCACCAGATCATTTTATAGAGGAGCCGC 239
||||||||||||||||| | | |||||||||||||||||||||| || |||||||| ||
Sbjct 389 GACACCGCTGGACAAGA-ATCTTTTAGATCCATCACCAGATCATACTACAGAGGAGCAGC 447
Query 240 CGGAGCGTTACTGGTTTACGACATCAGCAGGAGAGAGACGTTTAACCATGTGGCGAGTTG 299
|||||| ||||||||||| ||||||| |||||||||||||||||||||| |||| || ||
Sbjct 448 CGGAGCTTTACTGGTTTATGACATCACCAGGAGAGAGACGTTTAACCATCTGGCAAGCTG 507
Query 300 GTTGGAGGATGTTCGGCATTATGCCAGTACTCATAACATGAGTATCATTCTTATCGGAAA 359
||||||||||| |||||| |||| | | | | |||||||||||| || || || || ||
Sbjct 508 GTTGGAGGATGCTCGGCAACATGCAAAT-C-C-TAACATGAGTATTATGCTGATTGGGAA 564
Query 360 CAAATGCGTTCTTGTTCGCAAGAGAGCTATTAGTAAAGAGGAAGGAGAAGAGTTTGCCAA 419
|||||| | ||||| || |||||||||| |||| ||||||||||| || ||||||||||
Sbjct 565 CAAATGTGATCTTGCTCACAAGAGAGCTGTTAGCAAAGAGGAAGGTCAACAGTTTGCCAA 624
Query 420 ACAACATGGCCTTTTGTTTTTGGAAACGTCTGCAAGAACAT-CTCAAAACGTTGAGGAGG 478
| |||||||||| | || || ||| | ||||||||||| | ||||||||||||||||||
Sbjct 625 AGAACATGGCCTGCTATTCTTAGAAGCATCTGCAAGAAC-TGCTCAAAACGTTGAGGAGG 683
Query 479 CTTTCATAAAGACTGCTGCGAATATTCTCGAAAAGATTGAGAACGGTGTCTTTGATGTAT 538
| |||||| |||||||||| || || ||| | || ||| || | ||||||||||||||||
Sbjct 684 CCTTCATAGAGACTGCTGCCAAGATCCTCCAGAACATTCAGGATGGTGTCTTTGATGTAT 743
Query 539 CCAATGAGTCACCCGGGATCAAGGTTGGATATTCACATCCTCATGGTGAAGCTGGAGGAA 598
|||| |||||| | || |||||| |||| || | | |||| |||| |||||||||||
Sbjct 744 CCAACGAGTCATCAGGTATCAAGATTGGTTACGGGCGTACTCAAGGTGCAGCTGGAGGAA 803
Query 599 GATATGGTACCATCTCCCAGGGTGGTGGCTGTTGTGGTT 637
|| ||||||| ||||| ||||| ||||||||||||||||
Sbjct 804 GAGATGGTACGATCTCTCAGGGAGGTGGCTGTTGTGGTT 842
> AT2G04720.1 | Symbols: | pseudogene, GTP-binding protein -related,
similar to GTP-binding protein GI:6624302 from (Carica
papaya); blastp match of 60% identity and 5.0e-31 P-value
to GP|6624302|dbj|BAA88497.1||AB035919 small GTP-binding protein
{Carica papaya} | chr2:1653007-1654308 REVERSE LENGTH=1302
Length=1302
Score = 207 bits (112), Expect = 8e-53
Identities = 181/211 (86%), Gaps = 18/211 (9%)
Strand=Plus/Plus
Query 273 AGAGACGTTTAACCATGTGGCGAGTTGGTTGGAGGATGTTCGG-CA-T---TATGCCAGT 327
|||||| ||||||| ||||||||||||||||||||||||| || || | |||||||
Sbjct 323 AGAGACTTTTAACCTTGTGGCGAGTTGGTTGGAGGATGTT-GGACATTAAGTATGCCA-- 379
Query 328 ACTCATAACATGAGTATCATTCTTATCGGAAACAAATGCGTTCTTGTTCGCAAGAGAGCT 387
| |||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||
Sbjct 380 A-TCATAACATGAGTATCATTCTTATTGGACACAAATGTGATCTTGTTCGCAAGAGAGCT 438
Query 388 ATTAGTAAAGAGGAAGGAGAAGAGTTTGCCAAACAACATGGCCTTTTGTTTTTGGAAACG 447
||||||||||||||||||| ||||||||||||||||||| ||||| | | ||
Sbjct 439 ATTAGTAAAGAGGAAGGAGGAGAGTTTGCCAAACAACATTGCCTTCCG-----G----CG 489
Query 448 TCTGCAAGAACATCTCAAAACGTTGAGGAGG 478
||||||||||||||||||||| | |||||||
Sbjct 490 TCTGCAAGAACATCTCAAAACATAGAGGAGG 520
Score = 117 bits (63), Expect = 1e-25
Identities = 84/94 (89%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 545 AGTCACCCGGG-ATCAAGGTTGGATATTCACATCCTCATGGTGAAGCTGGAGGAAGATAT 603
||||| | ||| ||||| ||||||||||||| | |||| |||||||||||||||||||||
Sbjct 1153 AGTCA-CTGGGCATCAAAGTTGGATATTCACGTTCTCAAGGTGAAGCTGGAGGAAGATAT 1211
Query 604 GGTACCATCTCCCAGGGTGGTGGCTGTTGTGGTT 637
|||||||||||| ||| |||||| ||||||||||
Sbjct 1212 GGTACCATCTCCAAGGATGGTGGTTGTTGTGGTT 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5