BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg905806 Length=639 Score E Sequences producing significant alignments: (Bits) Value AT4G35860.1 | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-bind... 641 0.0 AT2G04720.1 | Symbols: | pseudogene, GTP-binding protein -rela... 207 8e-53 > AT4G35860.1 | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-binding 2 | chr4:16986840-16989047 REVERSE LENGTH=1122 Length=1122 Score = 641 bits (347), Expect = 0.0 Identities = 543/639 (85%), Gaps = 7/639 (1%) Strand=Plus/Plus Query 1 ATGTCATACGACTATCTGTTCAAATACATAATCATCGGAGACACAGGTGTGGGAAAAACG 60 ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| || Sbjct 209 ATGTCTTACGATTATCTCTTCAAGTACATAATCATCGGAGACACAGGTGTGGGAAAATCG 268 Query 61 TGCCTTCTTCTACAATTTACTGACAAGAGATTCCAACCAGTCCACGATCTAACCATTGGT 120 || || ||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||| Sbjct 269 TGTCTGCTTCTGCAATTTACTGATAAGAGGTTCCAACCAGTCCACGATCTCACCATTGGT 328 Query 121 GCCGGGTTCGGTGATCGAATGGTCACCGTCGATGGTCGGTCTATAAAACTTCAAATTTGG 180 | | |||||||| ||| ||||||||||||||||| || | || ||||| ||||||||| Sbjct 329 GTTGAGTTCGGTGCTCGGATGGTCACCGTCGATGGACGCCCCATCAAACTCCAAATTTGG 388 Query 181 GACACCGCTGGACAAGAGA-CATTTAGATCCATCACCAGATCATTTTATAGAGGAGCCGC 239 ||||||||||||||||| | | |||||||||||||||||||||| || |||||||| || Sbjct 389 GACACCGCTGGACAAGA-ATCTTTTAGATCCATCACCAGATCATACTACAGAGGAGCAGC 447 Query 240 CGGAGCGTTACTGGTTTACGACATCAGCAGGAGAGAGACGTTTAACCATGTGGCGAGTTG 299 |||||| ||||||||||| ||||||| |||||||||||||||||||||| |||| || || Sbjct 448 CGGAGCTTTACTGGTTTATGACATCACCAGGAGAGAGACGTTTAACCATCTGGCAAGCTG 507 Query 300 GTTGGAGGATGTTCGGCATTATGCCAGTACTCATAACATGAGTATCATTCTTATCGGAAA 359 ||||||||||| |||||| |||| | | | | |||||||||||| || || || || || Sbjct 508 GTTGGAGGATGCTCGGCAACATGCAAAT-C-C-TAACATGAGTATTATGCTGATTGGGAA 564 Query 360 CAAATGCGTTCTTGTTCGCAAGAGAGCTATTAGTAAAGAGGAAGGAGAAGAGTTTGCCAA 419 |||||| | ||||| || |||||||||| |||| ||||||||||| || |||||||||| Sbjct 565 CAAATGTGATCTTGCTCACAAGAGAGCTGTTAGCAAAGAGGAAGGTCAACAGTTTGCCAA 624 Query 420 ACAACATGGCCTTTTGTTTTTGGAAACGTCTGCAAGAACAT-CTCAAAACGTTGAGGAGG 478 | |||||||||| | || || ||| | ||||||||||| | |||||||||||||||||| Sbjct 625 AGAACATGGCCTGCTATTCTTAGAAGCATCTGCAAGAAC-TGCTCAAAACGTTGAGGAGG 683 Query 479 CTTTCATAAAGACTGCTGCGAATATTCTCGAAAAGATTGAGAACGGTGTCTTTGATGTAT 538 | |||||| |||||||||| || || ||| | || ||| || | |||||||||||||||| Sbjct 684 CCTTCATAGAGACTGCTGCCAAGATCCTCCAGAACATTCAGGATGGTGTCTTTGATGTAT 743 Query 539 CCAATGAGTCACCCGGGATCAAGGTTGGATATTCACATCCTCATGGTGAAGCTGGAGGAA 598 |||| |||||| | || |||||| |||| || | | |||| |||| ||||||||||| Sbjct 744 CCAACGAGTCATCAGGTATCAAGATTGGTTACGGGCGTACTCAAGGTGCAGCTGGAGGAA 803 Query 599 GATATGGTACCATCTCCCAGGGTGGTGGCTGTTGTGGTT 637 || ||||||| ||||| ||||| |||||||||||||||| Sbjct 804 GAGATGGTACGATCTCTCAGGGAGGTGGCTGTTGTGGTT 842 > AT2G04720.1 | Symbols: | pseudogene, GTP-binding protein -related, similar to GTP-binding protein GI:6624302 from (Carica papaya); blastp match of 60% identity and 5.0e-31 P-value to GP|6624302|dbj|BAA88497.1||AB035919 small GTP-binding protein {Carica papaya} | chr2:1653007-1654308 REVERSE LENGTH=1302 Length=1302 Score = 207 bits (112), Expect = 8e-53 Identities = 181/211 (86%), Gaps = 18/211 (9%) Strand=Plus/Plus Query 273 AGAGACGTTTAACCATGTGGCGAGTTGGTTGGAGGATGTTCGG-CA-T---TATGCCAGT 327 |||||| ||||||| ||||||||||||||||||||||||| || || | ||||||| Sbjct 323 AGAGACTTTTAACCTTGTGGCGAGTTGGTTGGAGGATGTT-GGACATTAAGTATGCCA-- 379 Query 328 ACTCATAACATGAGTATCATTCTTATCGGAAACAAATGCGTTCTTGTTCGCAAGAGAGCT 387 | |||||||||||||||||||||||| ||| ||||||| | ||||||||||||||||||| Sbjct 380 A-TCATAACATGAGTATCATTCTTATTGGACACAAATGTGATCTTGTTCGCAAGAGAGCT 438 Query 388 ATTAGTAAAGAGGAAGGAGAAGAGTTTGCCAAACAACATGGCCTTTTGTTTTTGGAAACG 447 ||||||||||||||||||| ||||||||||||||||||| ||||| | | || Sbjct 439 ATTAGTAAAGAGGAAGGAGGAGAGTTTGCCAAACAACATTGCCTTCCG-----G----CG 489 Query 448 TCTGCAAGAACATCTCAAAACGTTGAGGAGG 478 ||||||||||||||||||||| | ||||||| Sbjct 490 TCTGCAAGAACATCTCAAAACATAGAGGAGG 520 Score = 117 bits (63), Expect = 1e-25 Identities = 84/94 (89%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 545 AGTCACCCGGG-ATCAAGGTTGGATATTCACATCCTCATGGTGAAGCTGGAGGAAGATAT 603 ||||| | ||| ||||| ||||||||||||| | |||| ||||||||||||||||||||| Sbjct 1153 AGTCA-CTGGGCATCAAAGTTGGATATTCACGTTCTCAAGGTGAAGCTGGAGGAAGATAT 1211 Query 604 GGTACCATCTCCCAGGGTGGTGGCTGTTGTGGTT 637 |||||||||||| ||| |||||| |||||||||| Sbjct 1212 GGTACCATCTCCAAGGATGGTGGTTGTTGTGGTT 1245 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30843766258 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5