BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905807
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04730.1 | Symbols: | pseudogene, F-box protein-related, co... 782 0.0
AT4G33290.1 | Symbols: | F-box and associated interaction doma... 292 3e-78
AT2G38590.1 | Symbols: | F-box and associated interaction doma... 246 2e-64
AT4G09143.1 | Symbols: | pseudogene, type 2 peroxiredoxin -rel... 241 1e-62
AT3G04250.1 | Symbols: | F-box associated ubiquitination effec... 207 1e-52
AT1G48625.1 | Symbols: | pseudogene of F-box family protein | ... 200 2e-50
AT3G22421.1 | Symbols: | F-box and associated interaction doma... 172 4e-42
AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol ... 128 9e-29
AT3G20705.1 | Symbols: | pseudogene, hypothetical protein | ch... 69.4 5e-11
AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7... 65.8 7e-10
> AT2G04730.1 | Symbols: | pseudogene, F-box protein-related,
contains TIGRFAM TIGR01640 : F-box protein interaction domain;
similar to F-box protein family, AtFBX9 (GI:20197985) (Arabidopsis
thaliana) | chr2:1654500-1655699 REVERSE LENGTH=1200
Length=1200
Score = 782 bits (423), Expect = 0.0
Identities = 586/663 (88%), Gaps = 18/663 (3%)
Strand=Plus/Plus
Query 253 AAAGATACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGTGGATCGAACCT 312
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 344 AAAGATACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCTAACAAGGTGGATCGAACCC 403
Query 313 AGATATTCTCACCACCTAATCGGATGTGAAAGGTTCACTTACGCTCTTGGATACGTGGAT 372
|| ||||| ||||||||||||||||| | |||||||| |||||||||||||||||||| |
Sbjct 404 AGGTATTCCCACCACCTAATCGGATGCGCAAGGTTCAGTTACGCTCTTGGATACGTGGGT 463
Query 373 AATAAGTCTTGTCGTAGCCACAAATTATTGAGGTTTATAGATGATTACTTCTATGGACCT 432
|||| || ||||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 464 AATATCTCATGTCGTAGCCACAAATTATTGAGGTTTATAGATTATTTCTTCCATGGACCT 523
Query 433 GAGTTTGAATGGTATGAAATCTACGATTTCGAGTCTGGTTTATGGGCGACTCTTGATGTC 492
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 524 GAGTTAGAATGGTATGAAATCTATGATTTCGAGTCTGGTTTATGGACGACTCTTGATGTC 583
Query 493 ACTCCACACTGGTGTATATCGCTTGGTAGCCATGGAATTTCTCTTAAGGGAAACACTTAT 552
|||||||||||||||||||| |||||||||||||| || ||| |||| ||||||||||||
Sbjct 584 ACTCCACACTGGTGTATATCTCTTGGTAGCCATGGCATATCTATTAAAGGAAACACTTAT 643
Query 553 TGGAGTGCTATTAAAAGAAACGCACGC--C-ACGGATTGACCATATCTGATCATGACCAC 609
||||||||||||| ||||||| ||||| | ||||||||||||||| |||||||||||||
Sbjct 644 TGGAGTGCTATTACAAGAAACTCACGCAGCCACGGATTGACCATATATGATCATGACCAC 703
Query 610 ATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCTCTACCGTTAAGC 669
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 704 ATAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCTTCTGCCTCTACCGTTAAAC 763
Query 670 GTTGAGTATTATGGTTATGTGACTTTGTTTTGTGTTAGAGAAGAGAAGCTTGCGGCTTTA 729
| |||||||||||| |||||| ||| | || ||||| ||||||||||||||||| ||||
Sbjct 764 GCTGAGTATTATGGCGATGTGATTTTATCTTCTGTTAAAGAAGAGAAGCTTGCGGTTTTA 823
Query 730 CAACAA-AACAACCGTTG-GAATCCATATAAGTTTAATATATGGATTACAACTAATATTG 787
||||| || |||||| | ||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 824 CAACAGCAA-AACCGT-GCGAATCCATATATGTTTGATATATGGATTACAATTAATATTG 881
Query 788 AGCATGAACAGGTGTCGTGGAGCAAATTCTTGACAGTAGATATGGGAACTG-AA---A-- 841
||| || || |||| |||| ||| ||||||| ||| ||||||| ||||| || |
Sbjct 882 AGCCTGGCCATGTGTTATGGACCAAGTTCTTGAAAGTGGATATGGAAACTGTAATGGAAA 941
Query 842 CTCCATCTACAA--A-TGAGAGTTTTTTCATTGATGAGGaaaa-aaa-TTGCCATGCTTT 896
|||||| || || | ||| ||||| |||||||||||| |||| ||| ||| |||| ||
Sbjct 942 CTCCATTTAAAAGTAGTGAAAGTTTCTTCATTGATGAGAAAAACAAAATTGTCATGAGTT 1001
Query 897 TTG 899
|||
Sbjct 1002 TTG 1004
Score = 335 bits (181), Expect = 5e-91
Identities = 232/257 (90%), Gaps = 2/257 (1%)
Strand=Plus/Plus
Query 1 ATGACGATCACAAATCTCCCAAGCGTTTTATTAGAGGAGATTTTCTCCAGACTTCCTTTG 60
||||| ||||||||||||||||||| |||||| |||||||||||||| || |||| |||
Sbjct 1 ATGACTATCACAAATCTCCCAAGCGATTTATTGGAGGAGATTTTCTCTAGGTTTCCATTG 60
Query 61 AACTCTATGAGAGCAGTGCGATTAGCTTGCAAAACCTTTTATACTTTATCTAAAGGTAAG 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 61 AACTCTATGAGAGCAGTGCGATTAGCTTGCAAAACGTTTTATACTTTATCTAAATGTAAG 120
Query 121 AGCTTTGCGAAGCTACACATTGGTAAAGAAGCAGCAACAA-CAAGGGAAGGAGAGTCTCG 179
|||||||| ||||||||| ||||||||||| || |||||| ||| |||||| ||||| |
Sbjct 121 AGCTTTGCCAAGCTACACTTTGGTAAAGAAACAACAACAACCAA-GGAAGGGGAGTCCCA 179
Query 180 GATGATCTTGTTGATGGATTACAATCTTTATTTGATTAGCGTTGTTGCCGGTGAAGATCC 239
|||||| |||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 180 GATGATATTGTTGATGGATTACAATCTTTATTTGATTAGCGTTGTTGTCGATGGTGATCC 239
Query 240 ATATATAGAGTCTAAAG 256
|||||||||| |||||
Sbjct 240 GTATATAGAGTGTAAAG 256
> AT4G33290.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:16049573-16050865 FORWARD LENGTH=1293
Length=1293
Score = 292 bits (158), Expect = 3e-78
Identities = 460/595 (77%), Gaps = 63/595 (11%)
Strand=Plus/Plus
Query 256 GATACTAGGCTTGTGGTTTGGAATCCGTATTGG-GGGCAAACAAGGTGGATCGA-ACCTA 313
||||||||| |||| ||||||||||||||| || || |||||||||||||| | |||||
Sbjct 340 GATACTAGGATTGTTGTTTGGAATCCGTATAGGCAGG-AAACAAGGTGGATC-ATACCTA 397
Query 314 GATATTCTCACC-ACCTAAT-CGGATGTGAA-AGGT-TCACTTACGCTCTTGGATACGTG 369
|||||||||||| || || || | |||| | | ||| || ||||||||||||| |
Sbjct 398 GATATTCTCACCGTCC--ATACGTA-ATGAACA-ATATCAGATATGCTCTTGGATACGAG 453
Query 370 GATAATAAGTCTTGTCGTAGCCACAAATTATTGAGGTTTATAGATGATTACTTCTATGGA 429
||||||| ||| ||||||||| ||||||||||||||||||||| ||| || | | ||
Sbjct 454 AATAATAAATCTGGTCGTAGCCTTAAATTATTGAGGTTTATAGATTATTGCTAC-ACCGA 512
Query 430 CCTG-A-GTTTGAATGGTATGAAATCTACGATTTCGAGTCTGGTTTATGGGCGACTCTTG 487
| | |||| ||| |||||||||||||||| || |||| ||||||| | |||||||
Sbjct 513 AAAGCACATTTG-TTGGCATGAAATCTACGATTTTGACTCTGATTTATGGACAACTCTTG 571
Query 488 ATGTCACTCCACACTGGTGTATATCG-C---TTGG---T-AG-CCATGGAATTTCTCT-T 537
||||||||||||| |||| ||||| | | |||| | | ||| || | |||||
Sbjct 572 ATGTCACTCCACATTGGTATATATTGTCTAATTGGTCTTGTGTCCAAGGCGTCTCTCTCA 631
Query 538 AAGGGAAACACTTATTGGAGTGCTATTAAAAG-AAACGCACGCCACGGATTGACCATATC 596
||||| |||||||| ||| |||||| | ||| |||| || | | || || | | |
Sbjct 632 AAGGG-AACACTTACTGGTGTGCTA-GAGAAGAAAACTCA-G--ATGG-TT-A-C--A-- 679
Query 597 TGATCATGACCACATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCC 656
||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 680 --ATCAT------ATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGTCCGCTTCTGCC 731
Query 657 TCTACCG-TTAAGCGTTG-AG-TA-T---TATGGTTATGTGACTTTGTTTTGTGTTAGAG 709
||||||| |||| |||| || || | |||| |||||||||| | |||||||||||
Sbjct 732 TCTACCGGTTAA-CGTTATAGATAATGAATATGAATATGTGACTTCATCTTGTGTTAGAG 790
Query 710 AAGAGAAGCTTGCGGCTTTACAACAAAACAACCG-TTGGA-ATCCATATAAGTTTAATAT 767
||| |||| ||||||||||| || ||||| | || | |||||||| || || | ||
Sbjct 791 AAGGGAAGATTGCGGCTTTATTTCAGCACAAC-GATTC-ATATCCATATGAGCTTGAGAT 848
Query 768 ATGGATTACAACTAATATTGAG-CATGAACA-GGTGTCGTGGAGCAAATTCTTGA 820
||||||||| ||||| |||||| | ||| | ||||||||||| ||| |||||||
Sbjct 849 ATGGATTACGACTAAGATTGAGGCG-GAA-ATGGTGTCGTGGAACAAGTTCTTGA 901
> AT2G38590.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:16142897-16144184 FORWARD LENGTH=1288
Length=1288
Score = 246 bits (133), Expect = 2e-64
Identities = 512/683 (75%), Gaps = 73/683 (11%)
Strand=Plus/Plus
Query 256 GATACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGTGGATCGAACCT-AG 314
||||| ||| |||| ||||||||||||||||| || ||||||||||||||| || || ||
Sbjct 382 GATACAAGGGTTGTCGTTTGGAATCCGTATTGCGGACAAACAAGGTGGATCCAA-CTCAG 440
Query 315 ATATTCTCACC-ACCTAATCGGATGTGAAAGGTTCACTTACGCTCTTGGATACGTGGATA 373
||||||||||| || | | | || ||||||| ||||||||| |||||| |||||
Sbjct 441 ATATTCTCACCGTCC--A-CACA-AAGACAGGTTCATTTACGCTCTAGGATACAAGGATA 496
Query 374 A-TAAGTCTTGTCGTAGCCACAAATTATTGAGGTTTATAGATGATTACTTCTATG-G-A- 429
| || ||| || ||||| | |||||||||||||| ||||| ||| | ||| | | |
Sbjct 497 AGGAA-TCTCGTGGTAGCTTCCAATTATTGAGGTTTGTAGATTATT--TCCTAGGAGCAC 553
Query 430 CC-----TGAGT-TTGAATGGTATGAAATCTACGATTTCGAGTCTGGTTTATGGGCGACT 483
|| | | | || ||||||||||| |||||||| | |||| || |||| | |||
Sbjct 554 CCAAAAATCAATATT-TTTGGTATGAAATTTACGATTTTAACTCTGATTCATGGACAACT 612
Query 484 CTTGATGTCACTCCACACTGGTGTATAT-C-GCTTG-GTAGCCATGGAATTTCTCTTAAG 540
|||||||||||||||||||||||||||| | | ||| | | || ||| ||||||| ||
Sbjct 613 CTTGATGTCACTCCACACTGGTGTATATACTG-TTGTG-A-CCGTGGTGTTTCTCTCAAC 669
Query 541 GGAAACACTTATTGGAGTGCTATTAAAAGAAACGCACGCCACGGATTGACCATATCTGAT 600
||||||||||| ||| |||||| || |||| | | || | | | ||| |||| || |
Sbjct 670 GGAAACACTTACTGGTGTGCTA--AA--GAAAGGAAAGC-A-GAA--GACGATAT-TG-T 719
Query 601 CATGACCACATAATCTGTTTTGATTTTACAAGA-GAGAGATTTGGACCGCTTCTGCCTCT 659
| || ||||| || | |||||||||||||| | ||||||||||| |||||| ||||| |
Sbjct 720 C--GATCACATCATATCTTTTGATTTTACAA-ACGAGAGATTTGGGCCGCTTTTGCCTTT 776
Query 660 ACCGT-TAAGCGTTGA-GTATTATGGTTATG---T-G-A-CTTTGTTTTGTGTTAGAGAA 711
|||| |||| ||| | | | ||| |||| | | | |||| | || ||||| ||||
Sbjct 777 GCCGTCTAAG-GTT-ATGGAACATGAATATGAAATTGTAACTTTATCTTATGTTAAAGAA 834
Query 712 GAGAAGCTTGCGGCTTTA---CAACAAAAC-AACC-G-TTGGAATCCATATAAGTTTAAT 765
||||||||||| |||||| || || || || | | ||||||| | |||| ||
Sbjct 835 GAGAAGCTTGCAGCTTTATTTCAGCATTACGAAGCAGATTGGAATG-A-----GTTTGAT 888
Query 766 ATATGGATTACAACTAATATTGA-GCATGAACAGGTGTCGTGGAGCAAATTCTTGACAGT 824
||||||||||| ||||| ||||| || |||| |||||||||||||| ||||||| | |
Sbjct 889 ATATGGATTACGACTAAGATTGATGC-TGAAGTGGTGTCGTGGAGCATGTTCTTGAGAAT 947
Query 825 AGATATGGGAACT-GAA-ACTCCATCTACA-A-ATGAGA-GTTTT-TTCATTGATGAGGa 878
|||| |||| || | | | || ||| | ||| || | ||| ||||||||||||||
Sbjct 948 GGATACGGGACCTAGGATAGAGGTTCCACATATATGTGAAGGTTTCTTCATTGATGAGGA 1007
Query 879 aaa-aaaTT-GCCATGCTTTTTG 899
|| ||| | |||||| |||||
Sbjct 1008 GAAGAAAGTCGCCATGGGTTTTG 1030
> AT4G09143.1 | Symbols: | pseudogene, type 2 peroxiredoxin -related,
similar to type 2 peroxiredoxin, putative | chr4:5821214-5822443
FORWARD LENGTH=1230
Length=1230
Score = 241 bits (130), Expect = 1e-62
Identities = 375/486 (77%), Gaps = 46/486 (9%)
Strand=Plus/Plus
Query 258 TACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGTGGATCGAACCT-AGAT 316
||||||| || ||||||||||||||||||||||||| |||||||||||| ||||| |||
Sbjct 348 TACTAGGGTTTTGGTTTGGAATCCGTATTGGGGGCATACAAGGTGGATC-AACCTCCGAT 406
Query 317 ATTCTC-ACCACCTAATCGGATGTGAAAGGTTCACTTACGCTCTTGGATACGTGGATAA- 374
|||||| ||| || ||| |||| ||| ||||| | ||| ||||||||||||| |||||
Sbjct 407 ATTCTCAACCTCCGAAT-GGATTTGATAGGTTTAGTTATGCTCTTGGATACGAAGATAAG 465
Query 375 TAAGTCTTGTCGTAGCC-ACAAATTATTGAGGTTTATAGATGATTACTTCTATGGACCTG 433
|| |||||||||| || || || |||||||| ||||| ||| || | || ||| |
Sbjct 466 GAA-TCTTGTCGTA-CCTTTAAGTTCCTGAGGTTTCTAGATTATTTCTACAATACACCCG 523
Query 434 ------AGT-TTGAATGGTATGAAATCTACGATTTCGAGTCTGGTTTATGGGCGACTCTT 486
| | || |||||||||||||| ||||| || || ||||||| | | ||||||
Sbjct 524 AAACACAATCTT-TTTGGTATGAAATCTATGATTTTGACTCGGGTTTATAGACAACTCTT 582
Query 487 GATGTCACTCCACACT--GGTGTATATCGCTTGGTAGCCA-TGGAATTTCTCTTAAGGGA 543
|||||||||||||||| |||||| || | || | ||| ||| ||||| ||||||||
Sbjct 583 GATGTCACTCCACACTGGGGTGTACATTG-TT-CT-TCCAGTGGCGTTTCTATTAAGGGA 639
Query 544 AACACTTATTGGAGTGCTATTAAAAGAAACGCACGCCACGGATTGACCATATCTGATCAT 603
|||||||| ||| |||| | ||||||| | | | ||| | | | | | | |
Sbjct 640 AACACTTACTGGTGTGC---T-AAAGAAA-GGAGGTCAC--A-GGGTC--A-C--A--AA 684
Query 604 GACCACATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCTCTACCG 663
|| ||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 685 GATCACATTATCTGTTTTGATTTTACAAGAGAGAGATTCGGGCCGCTTCTCCCTCTACCG 744
Query 664 TTAAGCGTTGAGTATTATGGTTATGTGACTTTGTTTTGTGTTAGAGAAGAGAAGCTTGCG 723
| |||| || || | |||||||||| | |||||||| |||||||||||||||
Sbjct 745 TGCAGCGCTG--TA----G---ATGTGACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCA 795
Query 724 GCTTTA 729
||||||
Sbjct 796 GCTTTA 801
> AT3G04250.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:1121950-1122828 FORWARD LENGTH=879
Length=879
Score = 207 bits (112), Expect = 1e-52
Identities = 302/389 (78%), Gaps = 32/389 (8%)
Strand=Plus/Plus
Query 441 ATGGTATGAAATCTACGAT-TTCGAGTCTGGTTTATGGGCGACTCTTGATGTCACTCCAC 499
||||||||||||||||||| || || | | ||||||| | |||||||||||| |||||
Sbjct 123 ATGGTATGAAATCTACGATATT-GAAACCGATTTATGGACAACTCTTGATGTCCCTCCAT 181
Query 500 ACTGGTGTA-TATCGCTTGGTAGC--CATGGAATTTCTCTTAAGGGAAACACTTA-TTGG 555
| ||| || ||||| || || | | ||| ||||||| |||||||| || || ||
Sbjct 182 ATTGG-ATAGTATCG--TGTTATCAGCGTGGTGTTTCTCTCAAGGGAAATACCTACTT-T 237
Query 556 AGTGCTATTAAAAGAAACGCACGCCACGGATTGACCATATCTGATCATGACCACATAATC 615
|||||| ||||| | ||| || || || | ||| || | || |||||||||
Sbjct 238 TGTGCTACAAAAAG-TA---ACG-CA---ATAAACAAAATC-GA-C--GATCACATAATC 285
Query 616 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCTCTACCGTTAAGCGTTGAG 675
||||||||||| ||||| ||||||||||| || ||| ||| ||||||||| |||| || |
Sbjct 286 TGTTTTGATTTCACAAGTGAGAGATTTGGGCCACTTTTGCGTCTACCGTTTAGCGCTG-G 344
Query 676 T-ATTATGGTTATGTGACTTTGTTTTGTGTTAGAGAAGAGAAGCTTGCGGCTTTACA-AC 733
|| ||| ||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 345 CCATGATGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGCTTTACTTAC 404
Query 734 AAAACAACCGT-TGGAATCCATATAAGTTTAATATATGGATTACAACTAATATTGAGCAT 792
| |||| | |||||||||||| ||||| | |||||||| || ||||| || ||| ||
Sbjct 405 GCA-CAAC-GACTGGAATCCATATGAGTTTGAGATATGGATCACGACTAAGATCGAGTAT 462
Query 793 GA-ACAGGTGTCGTGGAGCAA-ATTCTTG 819
|| | || ||||||||||||| || ||||
Sbjct 463 GATAAAG-TGTCGTGGAGCAAGAT-CTTG 489
> AT1G48625.1 | Symbols: | pseudogene of F-box family protein
| chr1:17979561-17980815 FORWARD LENGTH=1255
Length=1255
Score = 200 bits (108), Expect = 2e-50
Identities = 459/617 (74%), Gaps = 70/617 (11%)
Strand=Plus/Plus
Query 258 TACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGTGGATCGAA-CCTAGAT 316
||||||||||||||||||||||||||||||||||||||||||| |||| || || |||
Sbjct 370 TACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGCAGATCAAAACCC-GAT 428
Query 317 ATTCTCACCAC-C-TAATC-GGATGTGA-A--A-G-----GTTCACTTACGCTCTTGGAT 364
||||||||||| | | || ||| | || | | | ||||| |||| |||| ||||
Sbjct 429 ATTCTCACCACGCATTCTCCGGAAGGGATAGTACGTACATGTTCAATTACTCTCTCGGAT 488
Query 365 ACGTGGATAATAAGTCTTGTCGTAGCCACAAATTATTGAGGTTTATAGATGATTACTTC- 423
||| | |||| || || ||||| ||||||||||||||||||||||||||| || | ||
Sbjct 489 ACGAGAATAAGAATTCATGTCGCAGCCACAAATTATTGAGGTTTATAGATTATCA-TTGG 547
Query 424 --T-AT-G-GACCTG-AG---TTTGAATGGTATGAAATCTACGATTTCGAGTCTGG-TTT 473
| || | | ||| | ||| |||||||||||||||||||| || || || |||
Sbjct 548 AATTATCGCGGCCTACACCAATTTTTTTGGTATGAAATCTACGATTTTGACTC-GGATTT 606
Query 474 ATGGGCGACTCTTGATGTCACTCCACACTGGTGTATA-TCGCTTGGT-AGCCATGGAATT 531
|||| | ||||||||||||||||||||||||| |||| | || | | ||| ||
Sbjct 607 ATGGACAACTCTTGATGTCACTCCACACTGGTTTATAGTTATTTC-TCAAAG-TGGTGTT 664
Query 532 TCTCTTAAGGGAAACACTTATTGGAGTGCTATTAAAAGAAACGCACGCCACGGATTGACC 591
|| || ||||||||||| || ||| |||||| || || | || || || || |
Sbjct 665 TCCCTCAAGGGAAACACATACTGGTGTGCTAGGAAGAGGAGCG---GC---GG-TT-A-- 714
Query 592 ATATCTGATCATGACCACATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTT 651
|| | ||||| | | || | |||||||||||||| |||||||||||||||||||||
Sbjct 715 -TAGC-GATCA---C-AT-TATT-TGTTTTGATTTTACTAGAGAGAGATTTGGACCGCTT 766
Query 652 CTGCCTCTACCGTTAAGCGTTGAGT-AT--T-ATGGTT-ATGTG--ACTTTGTTTTGTGT 704
||||| | ||||| ||| || | | || | || || ||||| | ||| | ||||||
Sbjct 767 TTGCCTTTGCCGTTTAGCTTT-ATTGATCGTCATCATTCATGTGTGATTTTATCTTGTGT 825
Query 705 TAGAGAAGAGAAGCTTGCGGCTTTA---CA--ACAAA-ACAACCGTTGGAATCCATATAA 758
||| |||||||||||||| | |||| || |||| || || | || || ||
Sbjct 826 TAGTGAAGAGAAGCTTGCAGTTTTATTTCAGTACAAGGACCACTACTATAAAA-ATGTA- 883
Query 759 GTTTAATATATGGATTACAACTAATATTGAG-CATGAACA-GGTGTCGTGGAGCAAATTC 816
||| || |||||||||||| |||| ||||| | ||| | ||||||||||||||| |||
Sbjct 884 GTTGAA-ATATGGATTACAGCTAAGCTTGAGGCC-GAA-ATGGTGTCGTGGAGCAAGTTC 940
Query 817 TTGACAGTAGATATGGG 833
|||| | || ||| |||
Sbjct 941 TTGAGAATAAATACGGG 957
> AT3G22421.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7949116-7950396 REVERSE LENGTH=1281
Length=1281
Score = 172 bits (93), Expect = 4e-42
Identities = 380/507 (75%), Gaps = 66/507 (13%)
Strand=Plus/Plus
Query 261 TAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGTGGATCGAACCTAGATATTC 320
||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 TAGTCTTGTTGTTTGGAATCCGTATTGGGGACAAACAAGGTGGATCGAACCTAGATATTT 416
Query 321 T-CACC--AC-CT-AATCGG-ATGTGAAAGGTTCA----C-T-TACGCTCTTGGATACGT 368
| | || | | ||| | ||| | | ||| || | | |||||||||||||||
Sbjct 417 TTC-CCGGATACAGAATTGTTATG-GCA-GGTACATGTACGTGTACGCTCTTGGATACA- 472
Query 369 GGATAATAAGTCTTGTCGTAGCCACAAATTATTGAGGTTTATAGATGATT-ACTTCTATG 427
|||||||| ||||||| |||||| | |||||||||||||||| | | ||| ||
Sbjct 473 --ATAATAAGA---GTCGTAGTCACAAAATCTTGAGGTTTATAGATGGTGCA-TTCGATT 526
Query 428 GACCTGAGTTTGAATGGTATGAAATCTACGATTTCGAGTCTGGTTTATGGGCGACTCTTG 487
||| ||| |||||||||||||||||||| || |||| ||| ||| |||||||||
Sbjct 527 TCCCT---TTT---TGGTATGAAATCTACGATTTTGACTCTGATTTGTGGACGACTCTTG 580
Query 488 ATGTCACTCCACACTGGTGTATA--T--CGCT-----TGGTAG------CCATGGAATTT 532
| || |||||||| |||| |||| | | || |||| | || ||| ||
Sbjct 581 ACGTTACTCCACAATGGTTTATAAATTTCCCTCCCCGTGGTTGTTATAACCGTGGTGTTA 640
Query 533 CTCTTAAGGGAAACACTTATTGGAGTGCTATTAA-AAGAAACG-CACGCCACGGATTGAC 590
|||| |||||||||||||| ||| ||||||| || ||| || | || | || ||||
Sbjct 641 CTCTCAAGGGAAACACTTACTGGTGTGCTAT-AAGAAGGAA-GTCAAAC-ACTAATTGGT 697
Query 591 CATATCTGATCATGACCACATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCT 650
| | ||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 698 T-TGT-TGATCTTGATCACATAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCT 755
Query 651 TCTGCCTCTACCGTTAAGCGTT-GAGTATTA--T--GGTTA---T-GTGACTTTGTTTTG 701
| ||||| | ||||| | || || ||| | | || | | |||||| | | |||
Sbjct 756 TATGCCTTTGCCGTTT-G--TTAGA-TAT-ACGTCCGGA-AGCCTTGTGACTCTATCTTG 809
Query 702 TGTTAGAGAAGAGAAGCTTGCGGCTTT 728
||||||||||||||||||||||| |||
Sbjct 810 TGTTAGAGAAGAGAAGCTTGCGGTTTT 836
> AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein | chr1:24571603-24573471
REVERSE LENGTH=1662
Length=1662
Score = 128 bits (69), Expect = 9e-29
Identities = 320/430 (74%), Gaps = 61/430 (14%)
Strand=Plus/Plus
Query 256 GATACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGTGGATCGAACCTAGA 315
||||||| | ||||||||||||||||||||| ||||||||||||||||||| || | |||
Sbjct 820 GATACTAAGATTGTGGTTTGGAATCCGTATTTGGGGCAAACAAGGTGGATCCAAACAAGA 879
Query 316 -T-ATTCTCACCAC-CTAATCGGATGTGAAAGGTTCACTTACGCTCTTGGATAC-G---T 368
| ||| | | | || | ||||| | || | | |||||||| |||||| | |
Sbjct 880 TTGATT-T-GCTGCGTTAGT-GGATG-G-AA-G---AAGTACGCTCTCGGATACGGAAAT 930
Query 369 -GGA-T-AATA-AG-TCTTGTCGTAGCCACAAATTATTGAGGTTTATAGATGA-TT--AC 420
| | || | || ||||||||||||| |||| | |||||| ||| |||| | || ||
Sbjct 931 AATAGTGAAAACAGATCTTGTCGTAGCCCCAAAATCTTGAGGGTTACAGATAATTTCAAC 990
Query 421 -TTCT-ATG-G---ACCTGA-GTTTGAATGGTATGAAATCTACGATTTCGAGTCTGGTTT 473
|| | | | | || | | | | | |||||||||||| ||||| || |||| | |
Sbjct 991 ATTTTCA-GCGAAAACAT-ACCTCTCCA--GTATGAAATCTATGATTTTGATTCTGATGT 1046
Query 474 ATGGGCGACTCTTGATGTCACTCCACACTGGTGTAT-ATCGCT-TGGTAGCCATGGAATT 531
|||| | ||||||||||| |||||||||||| ||| || | | | | | | ||| ||
Sbjct 1047 ATGGACTACTCTTGATGTGTCTCCACACTGGTTTATAAT-G-TCT-G-A-ACGTGGCCTT 1101
Query 532 TCTCTTAAGGGAAACACTTATTGGAGTGCTATTAAAAGAAAC-GCACGC-CACGGATTGA 589
||||| |||||||||||||| ||| | || | |||| ||| |||||| ||||| |
Sbjct 1102 TCTCTCAAGGGAAACACTTACTGG-G-GC-GCT-AAAG-AACGGCACGCATACGGA-T-- 1153
Query 590 CCATATCTGATCATGACCACATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGC 649
|| || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 CC--AT-TGATCAT------ATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGC 1204
Query 650 TTCTGCCTCT 659
|||| |||||
Sbjct 1205 TTCTACCTCT 1214
> AT3G20705.1 | Symbols: | pseudogene, hypothetical protein |
chr3:7235948-7237084 REVERSE LENGTH=1137
Length=1137
Score = 69.4 bits (37), Expect = 5e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 618 TTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCT 657
|||||||||||||||||||||||||||||||| |||||||
Sbjct 669 TTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCT 708
> AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7238999
REVERSE LENGTH=1089
Length=1089
Score = 65.8 bits (35), Expect = 7e-10
Identities = 41/44 (93%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 616 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCTCT 659
|||||||||||||||||||||||||||||| | | |||||||||
Sbjct 658 TGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCT 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5