BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905825
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03800.1 | Symbols: GEK1 | D-aminoacyl-tRNA deacylases | chr... 1526 0.0
> AT2G03800.1 | Symbols: GEK1 | D-aminoacyl-tRNA deacylases | chr2:1156713-1158934
FORWARD LENGTH=1262
Length=1262
Score = 1526 bits (826), Expect = 0.0
Identities = 911/953 (96%), Gaps = 2/953 (0%)
Strand=Plus/Plus
Query 1 ATGGTGACACTGATCGTAGCCACCACCTCCGATCCAGCGTCGATCAATCCTGCAGCGGCG 60
||||| ||||| ||||| ||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct 70 ATGGTAACACTAATCGTGGCCACCACCGCCGATCCAGCGTCGATCAACCCTGCGGCGGCG 129
Query 61 CTTCTCGCCATGCCCGGTTGGATCGCCGGACCTATCTTACCGCCGGACATAAAGAGTTTC 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 130 CTTCTCGCCATGCCCGGTTGGACCGCCGGACCTATCTTACCGCCGGACATAAAGAGTTTT 189
Query 121 AGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTTAAAGAAGACGATCTT 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 190 AGTAACAAGCAAACGAGAGTGATTCAACACGATAGATCTATAGTAAAAGAAGACGATCTC 249
Query 181 GATTTACGTTGGGAAGAAGCTACCGGTGAAGTTATTGATGAAGTCATCTTCCTCAGCCGT 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 250 GATTTACGTTGGGAAGAAGCTACCGGTGAAGTTGTTGATGAAGTCATCTTCCTCAGCCGT 309
Query 241 CACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGAGTGCTTCATCTA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CACACCGCCGTCTCAAATCGTCCTGCTTTAACTGTTCATCCGATTGGAGTGCTTCATCTA 369
Query 301 AAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCAGGATGGGCGGCGTTGCCAAACCCT 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct 370 AAGGATGGAGAATCACCGCCGCAAGGAGGAAAGCCTGGATGGGCGGCGTTGCCAAGCACT 429
Query 361 AGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGTTTAGTTCCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 AGAATTGGTCCATGGTTTCGTCTTTTGAAGAAAATGGCTGAAGCTCATGGTTTAGTTCCT 489
Query 421 GAGTTTGAGATAACATTGGAAGCTACTCATCATGGACCAATAACTAACAAGCCAACGATG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GAGTTTGAGATAACATTGGAAGCTACTCATCATGGACCAATAACTAACAAGCCAACGATG 549
Query 481 TTTTTGGAGATTGGTAGTACAGAGGAATACTGGAAGAGAG-ATGATGCGGCTCAAGTCAT 539
|||||||||||||||||||| ||||||||||||||||| | | || || |||||||||||
Sbjct 550 TTTTTGGAGATTGGTAGTACCGAGGAATACTGGAAGAG-GCAAGACGCAGCTCAAGTCAT 608
Query 540 GGCTCTTTTAATGTGGGAAGGACTTGGGCTAGGAGGCGGTGAAGCCGTGGGGAACTGGAA 599
||||||||||||||||||||| ||||||||||||||| |||||| || ||||| |||||
Sbjct 609 GGCTCTTTTAATGTGGGAAGGTCTTGGGCTAGGAGGCAGTGAAGAAGTAGGGAAGTGGAA 668
Query 600 CAGTGAAACCGGAAAGAGGAAAGTTCTCTTAGGGATTGGAGGTGGACACTATGCTCCTCG 659
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 669 AAGTGAAACCGGAAAGAGGAAAGTTCTTTTAGGCATTGGAGGTGGACATTATGCTCCTCG 728
Query 660 TCACATGGATATAGTTTTGAAAGACGATATTTGGGTAGGCCATTTACTTTCTGGATACTC 719
|||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 729 TCACATGGATATAGCTTTGAAAGATGATATTTGGGTAGGCCATTTGCTTTCTGGATACTC 788
Query 720 ATTACCGATGGAAGATCCAACTCAAACCAAAACAACGCCTGTAGAGAATTACATTGGTGG 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 789 ATTACCGATGGAAGATCCAACTCAAACCAAAACAACGCCTGGAGAGAATTACATTGGTGG 848
Query 780 AAATTGGAGACAGTCTATTAAGGCAGCATTTGAAGCTACTAAAGCAGCATTCCCAGGAGG 839
|||||||||||| || |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 849 AAATTGGAGACAATCAATTAAGGCAGCATTTGAAGCTACTAAAGCATCATTCCCCGGAGG 908
Query 840 CGAAATATTGGCTCATCTTGACCACAAGAGCTTCAAAGGATGGCAAAAGAAGGCCATTAC 899
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 CGAGATCTTGGCTCATCTTGACCACAAGAGCTTCAAAGGATGGCAAAAGAAGGCCATTAC 968
Query 900 AGAGTTTTTGGCAGAAGAGAGTATCAATGTTGGGAAGCCAAACGATTTCACAT 952
||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 969 AGAGTTTTTAGCAGAAGAGAGCATCAATGTTGGGAAGCCAAACGATTTCACAT 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5