BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905835
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16580.1 | Symbols: | F-box and associated interaction doma... 632 1e-180
AT5G36660.1 | Symbols: | transposable element gene | chr5:1439... 331 5e-90
AT5G36737.1 | Symbols: | transposable element gene | chr5:1445... 331 5e-90
> AT3G16580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5647376-5648746 REVERSE LENGTH=1371
Length=1371
Score = 632 bits (342), Expect = 1e-180
Identities = 661/805 (82%), Gaps = 62/805 (8%)
Strand=Plus/Plus
Query 1 ATTTATTCGGTAAGTATCGATCTAAAGATAGAGGTGTGTGAGTTAACCTTTTATTTTCCC 60
|||||||||||||| ||||||| ||||||| ||| ||||||||||||| || |||||
Sbjct 226 ATTTATTCGGTAAGCATCGATCCCAAGATAGTTGTGCGTGAGTTAACCTTAGATATTCCC 285
Query 61 GGTTTAGAATC-C--CACATACCTAAATACTTGATTGATTGCGATAAGTTGTTGCTATGT 117
||||||||||| | | ||||||||| | ||| |||||||||||||||| || ||||||
Sbjct 286 GGTTTAGAATCTCATGAGATACCTAAAAAATTGGTTGATTGCGATAAGTTATTACTATGT 345
Query 118 GGGACGGAGAAAGGAGTTGTTG-TTTGGAACCC-TTGCTTGAGACAGAGTAGATGGATTG 175
| | |||||||||||||| || |||||||||| | || ||||||| |||| |||||| |
Sbjct 346 GACATGGAGAAAGGAGTTG-TGCTTTGGAACCCGTGGC-TGAGACATAGTACATGGATCG 403
Query 176 AGCAAGATTTAAACCAAACTCGAATGGAAG-CCTATGGCATAGGATACAACAATAAGGGG 234
| || | || |||||| |||||||||| || | |||||||||||||||||||||||||||
Sbjct 404 ACCAGGGTTCAAACCACACTCGAATGG-AGTCTTATGGCATAGGATACAACAATAAGGGG 462
Query 235 AGTTACAAGATCGTTGCTGGTTGTTG-TTGGAAGGAACATCC-CACCAAGAGCTTGTGGA 292
|||||||||||| ||||| ||| || | |||||||| | || |||| |||| |||| ||
Sbjct 463 AGTTACAAGATCTTTGCTTTTTG-TGATCGGAAGGAA-AACCACACCCAGAGATTGTTGA 520
Query 293 CAATCCATGACTTTGCCTCCAATGCATGGAAAGACCTCGAGTTAGATTCTGGTAATAGGA 352
|||||||||||| |||||| |||| |||||||||| |||| | | || ||||||
Sbjct 521 CAATCCATGACTCTGCCTCTGATGCGTGGAAAGACCGCGAG-CCTA-T-TGATAATAGTC 577
Query 353 AGTTAGATTCTGGTATTAGTAAGGAAGAAAAAAGGCCTATATTACACAACAAAAGTACTG 412
|| | | | ||| || | || | ||| ||||| |||| || ||
Sbjct 578 AGGGA-AAAC--AAATT-GT-------TCATAA---C-ATA-TACAC--TAAAATTAGTG 619
Query 413 GTGTATCGTTGAACGGAAATTTGTA-TTGGATTACTT-TTTATGACAA-GACTGATCCCG 469
||||||| ||||| ||||||||||| |||| |||||| ||| ||| || |||||||| ||
Sbjct 620 GTGTATCATTGAATGGAAATTTGTATTTGG-TTACTTATTT-TGA-AACGACTGATCTCG 676
Query 470 TGTACAACCT-ATAT-AAATTCAATTAC-TCGAGCGAAAAG-TTC-TTCAGATTTTGTGA 524
||||| |||| || | ||| |||||| | ||||||| |||| || | || ||||||||
Sbjct 677 TGTACCACCTAAT-TGAAA-TCAATT-CTTCGAGCG-AAAGCGTCGTGAAG-TTTTGTGA 731
Query 525 TCTACCATGTGGAACGACGGACTATCTTAAGGATGCTCTT-GTCCTCAAGGTTTTTGAGG 583
|||||||||||| ||| || ||| ||||||||||||| || ||||| | |||||| ||||
Sbjct 732 TCTACCATGTGGGACGTCGAACTTTCTTAAGGATGCT-TTCGTCCTTAGGGTTTTCGAGG 790
Query 584 GAGATCGTTTTTCATTGTTAAAGCAATGCCATGCAACAAAGAAGATTGAGGTTTGGGTGA 643
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 791 GAGATCGATTTTCATTGTTAAAGCAATGCCATGCAACAAAGAAGATTGAGATTTGGGTGA 850
Query 644 GCAAGTACAAGATTAATAATAAT-TTGGATAGTGAAGATGTGGAATGGATAAAGTTCATG 702
||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||||||
Sbjct 851 GCAAGTACAAGATTAATAATAATCTTG-ATAG--A-GATGTGGAATGGATAAAGTTCATG 906
Query 703 GAAGTGTCAAGTCCTAACTTGCCGGATTTAGTAGATCC-TA-GATACTCTCAGCCAAGTT 760
||||| |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 907 GAAGTTTCAAGTCCTAACTTGCCGGATTTAGTAGATGGATTCGA--CTCTCAGCCAAGTT 964
Query 761 ACTTCATCGAAGATAAA-GGCTCGT 784
|||| || ||||||||| |||||||
Sbjct 965 ACTTTATTGAAGATAAAAGGCTCGT 989
> AT5G36660.1 | Symbols: | transposable element gene | chr5:14396688-14399025
FORWARD LENGTH=2338
Length=2338
Score = 331 bits (179), Expect = 5e-90
Identities = 295/349 (85%), Gaps = 16/349 (5%)
Strand=Plus/Plus
Query 1 ATTTATTCGGTAAGTA-TCGATCTAAAGATAGAGGTGTGTGAGTTAACCTTTTATTTTCC 59
|||||||||||||| | || ||| |||||||| | | ||| |||||||| || ||||
Sbjct 83 ATTTATTCGGTAAGCATTC-ATCCGAAGATAGAAATATATGAATTAACCTTAGATATTCC 141
Query 60 CGGTTTAGAATCCCACATACCTAAATACTTGATTGATTGCGATAAGTTGTTGCTATGTGG 119
|||||||||||||| ||||||||| || || | |||| | | |||||| || |
Sbjct 142 TGGTTTAGAATCCCAGATACCTAAAAACATGGTAGATT--G---A----TTGCTACGTTG 192
Query 120 GACGGAGAAAGGAGTTGTTGTTTGGAACCCTTGCTTGAGACAGAGTAGATGGATTGAGCA 179
| ||||||||||| ||| ||||||||||| ||||||||||||||| ||| ||| |||||
Sbjct 193 CATGGAGAAAGGAGCTGTGGTTTGGAACCCATGCTTGAGACAGAGTGGATAGATCGAGCA 252
Query 180 AGATTTAAACCAAACTCGAATGGAAGCCTATGGCATAGGATACAACAATAAGGGGAGTTA 239
||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 253 AGATTTACACCAAACTC-AATGGAATCCTATGGCATAGGATACAACAATAAGGGGAGTTA 311
Query 240 CAAGATCGTTGCTGGTTGTTGT-TGGAAGGAACATCCCACCAAGAGCTTGTGGACAATCC 298
||||||| ||||||||||| || || |||||||||||||| |||| |||||||||||| |
Sbjct 312 CAAGATCATTGCTGGTTGTCGTCTG-AAGGAACATCCCACAAAGACCTTGTGGACAATGC 370
Query 299 ATGACTTTGCCTCCAATGCATGGAAAGACCTCGAGTTAG-ATTCTGGTA 346
||||||||||||||||||| |||||| ||||| ||| || || ||||||
Sbjct 371 ATGACTTTGCCTCCAATGCTTGGAAATACCTCAAGTCAGTAT-CTGGTA 418
Score = 272 bits (147), Expect = 3e-72
Identities = 204/231 (88%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 442 ATTACTTTTT-ATGACAAGACTGATCCCGTGTACA----ACCTATATAAATTCAATTACT 496
|||| ||||| ||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 475 ATTA-TTTTTGATGACAAGACTGATCCCATGTACACCTGCCCTATATAAATTCAATTCCT 533
Query 497 CGAGCGAAAAGTTCTTCAGATTTTGTGATCTACCATGTGGAACGACGGACTATCTTAAGG 556
| || ||| || |||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 534 CCAGGGAATTCTTTTTCAGATTTTGTCATCTACCATGTGGAACGATAGACTATCGTAAGG 593
Query 557 ATGCTCTTGTCCTCAAGGTTTTTGAGGGAGATCGTTTTTCATTGTTAAAGCAATGCCATG 616
|||||||||| |||| ||||| |||||| |||| |||||||||||||| ||||||||||
Sbjct 594 ATGCTCTTGTACTCAGGGTTTATGAGGGGGATCAATTTTCATTGTTAAATCAATGCCATG 653
Query 617 CAACAAAGAAGATTGAGGTTTGGGTGAGCAAGTACAAGATTAATAATAATT 667
||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 654 CAACAAAGAAGATTGAGGTCTGGGTGAGCAAGTACAAGATTAATAATAATT 704
> AT5G36737.1 | Symbols: | transposable element gene | chr5:14455987-14458324
FORWARD LENGTH=2338
Length=2338
Score = 331 bits (179), Expect = 5e-90
Identities = 295/349 (85%), Gaps = 16/349 (5%)
Strand=Plus/Plus
Query 1 ATTTATTCGGTAAGTA-TCGATCTAAAGATAGAGGTGTGTGAGTTAACCTTTTATTTTCC 59
|||||||||||||| | || ||| |||||||| | | ||| |||||||| || ||||
Sbjct 83 ATTTATTCGGTAAGCATTC-ATCCGAAGATAGAAATATATGAATTAACCTTAGATATTCC 141
Query 60 CGGTTTAGAATCCCACATACCTAAATACTTGATTGATTGCGATAAGTTGTTGCTATGTGG 119
|||||||||||||| ||||||||| || || | |||| | | |||||| || |
Sbjct 142 TGGTTTAGAATCCCAGATACCTAAAAACATGGTAGATT--G---A----TTGCTACGTTG 192
Query 120 GACGGAGAAAGGAGTTGTTGTTTGGAACCCTTGCTTGAGACAGAGTAGATGGATTGAGCA 179
| ||||||||||| ||| ||||||||||| ||||||||||||||| ||| ||| |||||
Sbjct 193 CATGGAGAAAGGAGCTGTGGTTTGGAACCCATGCTTGAGACAGAGTGGATAGATCGAGCA 252
Query 180 AGATTTAAACCAAACTCGAATGGAAGCCTATGGCATAGGATACAACAATAAGGGGAGTTA 239
||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 253 AGATTTACACCAAACTC-AATGGAATCCTATGGCATAGGATACAACAATAAGGGGAGTTA 311
Query 240 CAAGATCGTTGCTGGTTGTTGT-TGGAAGGAACATCCCACCAAGAGCTTGTGGACAATCC 298
||||||| ||||||||||| || || |||||||||||||| |||| |||||||||||| |
Sbjct 312 CAAGATCATTGCTGGTTGTCGTCTG-AAGGAACATCCCACAAAGACCTTGTGGACAATGC 370
Query 299 ATGACTTTGCCTCCAATGCATGGAAAGACCTCGAGTTAG-ATTCTGGTA 346
||||||||||||||||||| |||||| ||||| ||| || || ||||||
Sbjct 371 ATGACTTTGCCTCCAATGCTTGGAAATACCTCAAGTCAGTAT-CTGGTA 418
Score = 272 bits (147), Expect = 3e-72
Identities = 204/231 (88%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 442 ATTACTTTTT-ATGACAAGACTGATCCCGTGTACA----ACCTATATAAATTCAATTACT 496
|||| ||||| ||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 475 ATTA-TTTTTGATGACAAGACTGATCCCATGTACACCTGCCCTATATAAATTCAATTCCT 533
Query 497 CGAGCGAAAAGTTCTTCAGATTTTGTGATCTACCATGTGGAACGACGGACTATCTTAAGG 556
| || ||| || |||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 534 CCAGGGAATTCTTTTTCAGATTTTGTCATCTACCATGTGGAACGATAGACTATCGTAAGG 593
Query 557 ATGCTCTTGTCCTCAAGGTTTTTGAGGGAGATCGTTTTTCATTGTTAAAGCAATGCCATG 616
|||||||||| |||| ||||| |||||| |||| |||||||||||||| ||||||||||
Sbjct 594 ATGCTCTTGTACTCAGGGTTTATGAGGGGGATCAATTTTCATTGTTAAATCAATGCCATG 653
Query 617 CAACAAAGAAGATTGAGGTTTGGGTGAGCAAGTACAAGATTAATAATAATT 667
||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 654 CAACAAAGAAGATTGAGGTCTGGGTGAGCAAGTACAAGATTAATAATAATT 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5