BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905841

Length=2022
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44510.1 | Symbols: TAO1 | target of AVRB operation1 | chr5:...   111    2e-23
  AT3G25510.1 | Symbols:  | disease resistance protein (TIR-NBS-L...  60.2    7e-08


> AT5G44510.1 | Symbols: TAO1 | target of AVRB operation1 | chr5:17929673-17934188 
REVERSE LENGTH=3564
Length=3564

 Score =  111 bits (60),  Expect = 2e-23
 Identities = 196/260 (75%), Gaps = 16/260 (6%)
 Strand=Plus/Plus

Query  1744  GCAGAAAATTGTGAGTCT-T--TAG-AGAGACTATATTCCTCCTGCCACAATCCATATAT  1799
             |||| | ||||||||||| |  | | |||||||| ||| || ||  || |||||| | ||
Sbjct  2923  GCAGGAGATTGTGAGTCTCTGGT-GCAGAGACTAGATTGCTTCTTTCAAAATCCAAAGAT  2981

Query  1800  CAG-TCTCAACTTTGATAATTGCTTTAAACTAAATCAAGAAGCAAGAGATCTCATCATCC  1858
               | ||||||||| | ||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct  2982  -TGTTCTCAACTTCGCTAACTGCTTCAAACTGAATCAAGAAGCAAGAGATCTCATCATCC  3040

Query  1859  AGACATCGACTC--A-ACTTACGGTCTTACCCGGTGGAGATA-TACCTACCTACTTCACT  1914
             |||||||| ||   | |  | || | ||||| |||| | | | | ||| | |||||||| 
Sbjct  3041  AGACATCGGCTTGTAGAAATGCGATATTACCAGGTGAAAA-AGTGCCTGCATACTTCACG  3099

Query  1915  TATCGAGCTAGTGGAGGTTCTCTAGTAGTGAAGTTAAAGGAGAGGCCT-TTCTGTTCAAC  1973
             || || |||| ||| | |||| ||  ||||||||| ||  ||| |  | |||| | ||| 
Sbjct  3100  TACCGCGCTACTGGTGATTCTTTAACAGTGAAGTTGAACCAGAAGTATCTTCT-T-CAAT  3157

Query  1974  CTT-GATATTTAAGGTTTGC  1992
             ||| || |||||| | ||||
Sbjct  3158  CTTTGAGATTTAAAGCTTGC  3177


> AT3G25510.1 | Symbols:  | disease resistance protein (TIR-NBS-LRR 
class), putative | chr3:9260838-9268797 REVERSE LENGTH=5946
Length=5946

 Score = 60.2 bits (32),  Expect = 7e-08
 Identities = 34/35 (97%), Gaps = 0/35 (0%)
 Strand=Plus/Plus

Query  1087  GGATGCTCAAGTTTGGTGGAGCTGCCTTCCTCTAT  1121
             |||||||||||||||||||||||||||| ||||||
Sbjct  5695  GGATGCTCAAGTTTGGTGGAGCTGCCTTACTCTAT  5729



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 100200287820


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5