BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905843
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57630.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 385 6e-106
AT5G38350.1 | Symbols: | Disease resistance protein (NBS-LRR c... 281 8e-75
AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-L... 248 9e-65
AT3G03855.1 | Symbols: | pseudogene of disease resistance prot... 233 2e-60
AT1G65850.2 | Symbols: | Disease resistance protein (TIR-NBS-L... 222 5e-57
AT4G36140.1 | Symbols: | disease resistance protein (TIR-NBS-L... 187 2e-46
> AT1G57630.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain
family protein | chr1:21345639-21346157 FORWARD LENGTH=519
Length=519
Score = 385 bits (208), Expect = 6e-106
Identities = 393/480 (82%), Gaps = 22/480 (5%)
Strand=Plus/Plus
Query 5 TTT-CTTCTTCTTCTTCGTCTCGAAACTGGGATCACAATGTCTTTCCGAGCTTCCACGGG 63
||| |||| ||||||| |||||||| ||||||| || |||| ||||||||||| ||||||
Sbjct 31 TTTCCTTCATCTTCTTTGTCTCGAACCTGGGATTACGATGTTTTTCCGAGCTTTCACGGG 90
Query 64 CCGGACGTACGCAAAGGCC-TTCTCAGTCACCTTCT--AG-AGAAGTTTAAAATCAAAGG 119
|| ||||||||| ||| ||||||| || |||| || || ||||| || ||||
Sbjct 91 GAAGATGTACGCAAA-GCCTTTCTCAGCCAGATTCTCAAGAAGGAGTTTGGAAGAAAAGC 149
Query 120 AATCCAA-TCATTCATCGATAACGAGATCAG-GAGAGGAGA-ATCTATCGGTCCTGAACT 176
||| ||| | || | ||| ||||||| | ||||||||| || |||||||||| |||
Sbjct 150 AAT-CAACTTTTTTGTTGATCACGAGAT-GGAGAGAGGAGAGTTC-ATCGGTCCTGTACT 206
Query 177 CAAACGGGCAATCAAAGGATCTAAGATTGCACTCGTCTTGCTCTCCAAAAACTACGCTTC 236
||||| ||| |||||||||||||||||||| || |||||||||||||| || ||||||||
Sbjct 207 CAAACAGGCGATCAAAGGATCTAAGATTGCTCTTGTCTTGCTCTCCAAGAATTACGCTTC 266
Query 237 TTCGTCGTGGTGTCTTGACGAATTGGTGGAGATCATGAACAAAGAGTTGGGTCAAACTGT 296
||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||| ||
Sbjct 267 TTCGTGGTGTTGTCTTGACGAATTGGTGGAGATCATGAAGAAAGAGTCGGGTCAAACGGT 326
Query 297 AATGACCATTTTCTATGATGTTGATCCAACGGAAGTTAAGAACCAGACCGGAGTTTTTGG 356
|| |||||||||||||| |||||||||| ||||| ||||| |||||||||| ||||||
Sbjct 327 GATTACCATTTTCTATGAAGTTGATCCAAATGAAGTAAAGAAGCAGACCGGAGATTTTGG 386
Query 357 GAAGGTCTTTGGAGAAACTTGT-AAGGGAAAAACAGAGGAGAAGATTGATACGTGGAG-A 414
||||| ||| |||||||||| |||| |||| | ||||| ||| || | || ||||| |
Sbjct 387 GAAGGCCTTCAAAGAAACTTGTCAAGGTAAAA-CTGAGGAAAAGGTTCAGACATGGAGGA 445
Query 415 AATGCTTTGGAGGGTGTAG------CCACAATCGCTGGTTACCATTTAAGCAACTGTTTC 468
|| |||||||||||||| | |||||||||| |||| |||| ||||||||| |||
Sbjct 446 AA-GCTTTGGAGGGTGTGGGTTTGGCCACAATCGCAGGTTTTCATTCAAGCAACTGGTTC 504
> AT5G38350.1 | Symbols: | Disease resistance protein (NBS-LRR
class) family | chr5:15328659-15331528 FORWARD LENGTH=2502
Length=2502
Score = 281 bits (152), Expect = 8e-75
Identities = 350/442 (79%), Gaps = 28/442 (6%)
Strand=Plus/Plus
Query 575 TCAACCAAAAAGATAT-CATGGTTCCTAATTTAGGAGTCGCACAAGAAAGGTTGAAAGAC 633
||||||| || ||||| | | ||| | |||||||||| ||||| || |||||||| |||
Sbjct 335 TCAACCACAAGGATATGGA-GCTTCATCATTTAGGAGTTGCACAGGATAGGTTGAACGAC 393
Query 634 AAGGAAA-TATTTCTCGTTCTTGATGATG--TTGATCGGTTAGA-ACAACTGGATGCCT- 688
|| |||| | || | ||||| ||| | | |||||| || | | |||||| |||| ||
Sbjct 394 AA-GAAAGTGCTTATTGTTCTCGAT-A-GCATTGATCAGTCA-ATACAACTAGATG-CTA 448
Query 689 TGGCAAAAGAAACTCGGTGGTTTGGTCC-TCGAAGTCGGATTATCATCACAACACAAGAT 747
| ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 449 TTGCAAAAGAAACTCGGTGGTTTGG-CCATGGAAGTCGGATTATCATCACAACACAAGAC 507
Query 748 CTAAGAGTTTTAGA-GGCACATGGGATCAACCATATTTATAAAGTGGATTTTCCATCAAC 806
| || | |||| || ||||||||| |||||||||||||| || ||||| ||||||||| |
Sbjct 508 CAAAAACTTTT-GAAGGCACATGGAATCAACCATATTTACAAGGTGGAGTTTCCATCAGC 566
Query 807 -TCATGAGGCTTTTCAAATGGTCTGTATATATGCTTTTGGTCAGAAGAACCCTGAAT-AT 864
| |||| |||| ||| ||| | ||||| ||||||||||| || || |||| ||| ||
Sbjct 567 AT-ATGAAGCTTATCAGATGTTTTGTATGTATGCTTTTGGCCAAAACTTCCCT-AATGAT 624
Query 865 GATTTCACAGAA-CTTGTTTGGGAAGTTGCAAATCTTGCTAG-TCAACTTCCTCTAGGAC 922
| |||| || | |||| |||||||||| |||| ||| ||| ||| || ||| | ||||
Sbjct 625 GGTTTCG-AGGAGCTTGCTTGGGAAGTTACAAAACTTT-TAGGTCATCTACCTTTGGGAC 682
Query 923 TAA-AGGTTATGGGCTCCCACTTCAAGAGAAAA-TCCAAGCAAGAGTGGAAAAATGCTCT 980
||| || ||||||| ||||||||| ||| || || | ||| |||||| ||||||| |
Sbjct 683 TAAGAG-TTATGGGTTCCCACTTCC-GAGGAATGTCTAGGCATGAGTGGGTAAATGCTTT 740
Query 981 ACCAAGTTTGAAGAATCGCCTT 1002
|||||| || |||| |||||||
Sbjct 741 ACCAAGGTTAAAGATTCGCCTT 762
> AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class), putative | chr3:9260838-9268797 REVERSE LENGTH=5946
Length=5946
Score = 248 bits (134), Expect = 9e-65
Identities = 344/442 (78%), Gaps = 28/442 (6%)
Strand=Plus/Plus
Query 575 TCAACCAAAAAGATATC-ATGGTTCCTAATTTAGGAGTCGCACAAGAA-AGGTTGAAAGA 632
||||||| | ||| || | ||||||| |||||||||| | | || || |||||||| ||
Sbjct 4532 TCAACCATATGGATGTCGA-GGTTCCTCATTTAGGAGTTGTAGAA-AATAGGTTGAATGA 4589
Query 633 CAAGGAAA-TATTTCTCGTTCTTGATGATGTTGATCGGTTAGA-ACAACTGGATGCCT-T 689
||| ||| || || | ||||| ||| | | |||| || | | ||||| |||| || |
Sbjct 4590 CAA-AAAAGTACTTATTGTTCTAGATAACATCGATCAGTCA-ATGCAACTAGATG-CTAT 4646
Query 690 GGCAAAAGAAACTCGGTGGTTTGGTCCTCGAAGTCGGATTATCATCACAACACAAGATCT 749
|||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |
Sbjct 4647 CGCAAAAGAAACTCGGTGGTTCGGTCATGGAAGTCGGATTATCATCACAACACAAGACCA 4706
Query 750 AAGAGTTTTAGA-GGCACATGGGATCAACCATATTTATAAAGTGGATTTTCCATCAACTC 808
|| | |||| || ||||||||| |||||||||||||| || ||||||| ||| ||||| |
Sbjct 4707 AAAACTTTT-GAAGGCACATGGCATCAACCATATTTACAAGGTGGATTATCCGTCAACAC 4765
Query 809 ATGAGGCTTTTCAAATGGTCTGTATATATGCTTTTGGTCAGAAGAACCCTGAATATGA-T 867
|||| |||| ||||| | ||||| | |||| ||||| | ||| |||| || |||| |
Sbjct 4766 ATGAAGCTTGCCAAATCTTTTGTATGTCTGCTGTTGGTAAAAAGTTCCCTAAAGATGAGT 4825
Query 868 TTCACAGAACTTGT-TTGGGAAGTTGCAAATCTTGCTAG-TCAACTT-CC-TCTAGGACT 923
|||| |||||||| |||| |||| |||||||| ||| | ||| | || | | |||||
Sbjct 4826 TTCA-AGAACTTGCATTGG-AAGTCACAAATCTTT-TAGGT-AACCTACCAT-TGGGACT 4880
Query 924 AA-AGGTTATGGGCTCCCACTT-CAAGAGAAAATCCAAGCAAGAGTGGAAAAATGCTCTA 981
|| || |||||||||| || || | | ||| || ||||| ||||||| |||||| |||
Sbjct 4881 AAGAG-TTATGGGCTCTCATTTTCGGG-GAATGTCTAAGCAGGAGTGGATAAATGCACTA 4938
Query 982 CCAAGTTTGAAGAA-TCGCCTT 1002
||||| || ||| | || ||||
Sbjct 4939 CCAAGGTT-AAGGACTCACCTT 4959
> AT3G03855.1 | Symbols: | pseudogene of disease resistance protein
| chr3:986948-990738 FORWARD LENGTH=3791
Length=3791
Score = 233 bits (126), Expect = 2e-60
Identities = 304/387 (79%), Gaps = 23/387 (6%)
Strand=Plus/Plus
Query 33 GGAT-CACAATGTCTTTCCGAGCTTCCACGG-GCCGGACGTACGCAAAGGC-CTTCTCAG 89
|||| ||| ||||||| |||||||||||||| | | || || |||||| | |||| ||
Sbjct 142 GGATACACGATGTCTTCCCGAGCTTCCACGGTG-CAGATGTCCGCAAA-TCGTTTCTGAG 199
Query 90 TCAC-CTTCTAG-AGAAGTTTAAAATCAAAGGAATCCAATCATTCATCGATAACGAGATC 147
|||| | ||| | || || | | || |||||| ||| | | |||||| ||||| || |||
Sbjct 200 TCACAC-TCT-GAAGGAGCTCAGAAGCAAAGGTATCGACTTATTCATTGATAATGATATC 257
Query 148 AGGAGAGGAGAATCTATCGGTCCTGAACTCAAACGGGCAATCAAAGGATCTAAGATTGC- 206
||||||||||| |||||| ||||| |||||| || ||| | ||||| | | | ||
Sbjct 258 TTGAGAGGAGAATTTATCGGCCCTGAGCTCAAAAAAGCGATCCATGGATCGAGGCTCGCG 317
Query 207 ACTCGTCTTGCTCTCCAAAA-ACTACGCTTCTTCGTCGTGGTGTCTTGACGAATTGGTGG 265
| | ||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 318 A-TTGTCTTGCTCTCGAAAAGA-TACGCTTCTTCGTCGTGGTGTCTTGACGAATTGGCGG 375
Query 266 AGATCATGAA---CAAAGA-G-TTG-GGTCAAACTGTAATGACCATTTTCTATGATGTTG 319
|||| ||||| ||| || | || |||||||| || ||| |||||||||| || || |
Sbjct 376 AGATTATGAAGTGCAAGGAAGCTTTTGGTCAAACAGTGATGGCCATTTTCTACGAAGTGG 435
Query 320 ATCCAACGGAAGTTA-AGAACCAGACCGGAGTTTTTGGG-AAGGTCTTTGGAGAAACTTG 377
||||||| || || | |||| |||||||||| ||||||| ||| |||| |||||||||
Sbjct 436 ATCCAACTGATGT-AGAGAAGCAGACCGGAGGTTTTGGGGAAG-TCTTCACAGAAACTTG 493
Query 378 TAAGGGAAAAACAGAGGAGAAGATTGA 404
| |||| ||||||| ||| | |||||
Sbjct 494 TGAGGGTAAAACAGCTGAGGACATTGA 520
> AT1G65850.2 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:24494678-24498542 FORWARD LENGTH=3269
Length=3269
Score = 222 bits (120), Expect = 5e-57
Identities = 343/446 (77%), Gaps = 33/446 (7%)
Strand=Plus/Plus
Query 575 TCAACCAAAAAGATATC-ATGGTTCCTAATTTAGGAGTCGCACAAGAAAGGTTGAAAGAC 633
||||||| ||||||||| | | ||||| | ||||||| | | |||| || |||||||||
Sbjct 982 TCAACCACAAAGATATCGA-GATTCCTCACCTAGGAGTTGTAGAAGATAGATTGAAAGAC 1040
Query 634 AAGGAAA-TATTTCTCGTTCTTGATGATGTTGATCGGTTAGA-ACAACTGGATGCCT-TG 690
|| |||| | ||| | ||||||||| || | || | || | | |||||| |||| || |
Sbjct 1041 AA-GAAAGTGTTTATTGTTCTTGATAATATCGACCAGTCA-ATACAACTAGATG-CTATT 1097
Query 691 GCAAAAGAAACTCGGTGGTTTGGTCCTCGAAGTCGGATTATCATCACAACACAAGATCT- 749
|||||||||| ||| |||||||||| | |||||||||||||||||||||||||||| |
Sbjct 1098 GCAAAAGAAAGTCGATGGTTTGGTCATGGAAGTCGGATTATCATCACAACACAAGACCGG 1157
Query 750 AAGAGTTTTAGA-GGCACATG--GG-ATCAACCATATTTATAAAGTGGATTTTCCATCAA 805
|| | |||| || |||||||| || |||||||||||||| || || |||||||||||
Sbjct 1158 AA-ACTTTT-GAAGGCACATGATGGCATCAACCATATTTACAACGTAAATTTTCCATCAG 1215
Query 806 C-TCATGAGGCTTTTCAAATGGTCTGTATATATGCTTTTGGTCAGAAGAAC--CCTGAAT 862
| | |||| |||| ||||| | ||||| ||||||||||| || || || ||| ||
Sbjct 1216 CAT-ATGAAGCTTGCCAAATATTTTGTATGTATGCTTTTGGACA-AA-AATTTCCTAAAG 1272
Query 863 ATGATTTC-ACAGAACTTGTTTGGGAAGTTGCAAATCTTGCTAG-TCAACTTCC-TCTAG 919
||| |||| | ||| |||| |||||||||||||| ||| ||| | ||| || | | |
Sbjct 1273 ATGGTTTCGA-AGAGCTTGCATGGGAAGTTGCAAAACTTT-TAGGTGGACTACCAT-TGG 1329
Query 920 GACTAA-AGGTTATGGGCTCCCACTT-CAAGAGAAAATCCAAGCAAGAGTGGAAAAATGC 977
| ||| || |||||||||| || || | | ||| || || || ||||||| ||||||
Sbjct 1330 GTTTAAGAG-TTATGGGCTCTCATTTTCGGG-GAATGTCTAAACATGAGTGGATAAATGC 1387
Query 978 TCTACCAAGTTTGAAGAA-TCGCCTT 1002
||||| || || ||| | |||||||
Sbjct 1388 CCTACCGAGGTT-AAGGACTCGCCTT 1412
> AT4G36140.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class), putative | chr4:17098956-17104479 REVERSE LENGTH=4824
Length=4824
Score = 187 bits (101), Expect = 2e-46
Identities = 163/192 (85%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 613 GCACAAGAAAGGTTGAAAGACAAGGAAA-TATTTCTCGTTCTTGATGATGTTGATC-GGT 670
||||| |||| |||||||||||| |||| | | || |||||||||||||| || | |
Sbjct 1099 GCACATGAAATGTTGAAAGACAA-GAAAGTGGTACTTGTTCTTGATGATGTGGA-CAGCA 1156
Query 671 TAGAACAACTGGATGCCTTGGCAAAAGAAACTCGGTGGTTTGGTCCTCGAAGTCGGATTA 730
||| |||| | |||||||||||||| ||| ||||||||||||||||| ||||||||||||
Sbjct 1157 TAGGACAATTAGATGCCTTGGCAAACGAAGCTCGGTGGTTTGGTCCTGGAAGTCGGATTA 1216
Query 731 TCATCACAACACAAGATCTAAGAGTTTTAGAGGCACATGGGATCAACCATATTTATA-AA 789
|||||||||||||||||| |||| ||||||||| ||| |||||| | |||| |||| ||
Sbjct 1217 TCATCACAACACAAGATCAAAGACTTTTAGAGGAACAAGGGATCCA--ATATATATACAA 1274
Query 790 -GTGGATTTTCC 800
|||||||||||
Sbjct 1275 CGTGGATTTTCC 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5