BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905845
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04940.1 | Symbols: | scramblase-related | chr2:1736485-174... 1757 0.0
> AT2G04940.1 | Symbols: | scramblase-related | chr2:1736485-1740388
REVERSE LENGTH=1499
Length=1499
Score = 1757 bits (951), Expect = 0.0
Identities = 1107/1182 (94%), Gaps = 12/1182 (1%)
Strand=Plus/Plus
Query 1 ATGCTCTGCCTCTCTAGACGCTCACTCTCTTCTCTTCTCCGATCCGGTTTCAATCTCCGC 60
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 ATGATCTACCTCTCTAGACGCTCACTCTCTTCTCTTCTCCGATCCGGTTTCAATCTCCGC 194
Query 61 GGCGATCTTGCTGCGGCAGCTCTCTCCTGTTCCTCTAC-CTTCTTTGACTCAGACGGTAG 119
||||||||| | || |||||| |||| ||||||||| | ||||| ||| | |||||| |
Sbjct 195 GGCGATCTTACAGCAGCAGCTGTCTCTTGTTCCTCT-CTCTTCTCCGACGCGGACGGTGG 253
Query 120 GATTAAGAATTTCCATTCTCGAGCTGGAAATGCAATCTTATGGAGAAATAGTCCA-TTAT 178
||||||||| || || || |||||||| |||||| | ||||||||||||||| || |||
Sbjct 254 GATTAAGAAGTTACACTCGCGAGCTGGGAATGCAGTGTTATGGAGAAATAGT-CAGCTAT 312
Query 179 GTAGTCCTCAAGGAAGCTTTTTTGGACGA-GA--ACAAGTCTCAAGTTCCGTGTTTCGAT 235
||||| ||||||||||||||||||||||| || |||||||||| |||| ||||||||||
Sbjct 313 GTAGTTCTCAAGGAAGCTTTTTTGGACGAGGAGGACAAGTCTCAGGTTCTGTGTTTCGAT 372
Query 236 GTTTCTGCAGTGGCAGTGATAC-T-T-CTCCTAGCTTGGATAGGAAGTTTTTGGCTCAGC 292
||||||||||||| |||||||| | | |||||||||||||| ||||||||||||||||||
Sbjct 373 GTTTCTGCAGTGGTAGTGATACTTCTCCTCCTAGCTTGGATCGGAAGTTTTTGGCTCAGC 432
Query 293 TATGGGTTGCAGATAAGAAAAAGCTTAAGGCTATGGAAAAGCGATATCGGAAAGCTTATA 352
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 433 TATGGGTTGCAGATAAGAAAAAGCTAAAGGCTATGGAAAAGCGATATAAGAAAGCTTCTA 492
Query 353 AGCATAGGAACTACACTGTGAATGATGGATTCGATGTCCATAGTGAGATTGTTGAGCCTG 412
|||||||||||||||||| ||||||||||| ||||||||| ||| | ||||||||||
Sbjct 493 AGCATAGGAACTACACTGAAAATGATGGATTTGATGTCCATTTTGAAACTGTTGAGCCTA 552
Query 413 CAGTGCATCAACCACCGGTTAGCCAGTCTATGTCTGGTCTTCTGAAGCCTAAAACTTCTA 472
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 CAGTGGAGCAACCACCGGTTAGCCAGTCTATGTCTGGTCTTCTGAAGCCTAAAACTTCTG 612
Query 473 ATGAGGCCAAAATTGCAACTCTGCTTGCACGATCGAATTTGCTGATTACAAGAGACATTG 532
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 613 ATGAGGCCAAAATTGCAACTCTGCTTGCACGATCGAATTTGCTGGTTACAAGAGATATTG 672
Query 533 AATGGGCAAATCTGGTTCTTGGTTTTGAACAGGAAAATCGCTATATTGTAGTTGATGTTT 592
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 673 AATGGGCAAATCTGGTTCTTGGTTTTGAACAGGAAAATCGCTATATTGTAGTAGATGTTT 732
Query 593 GCTATCCTCAGGCACCTGTGGGGTCTATCCGGGAACAAAGCAATTTAATTGCGCGGCAGC 652
|||||||| |||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 733 GCTATCCTGAGGCACCTGTGGGGTCTATCCGAGAACAAAGCAATTTACTGGCGCGGCAGC 792
Query 653 TGCTTCGTACTCGGCGCCCGTTTGTTGCTTCCATAACTGATGCTTTGGGTAATGAGCTTT 712
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TGCTTCGTACCCGGCGCCCATTTGTTGCTTCCATAACTGATGCTTTGGGTAATGAGCTTT 852
Query 713 TCCGGGTTCG-CAGACCTTTCTGGTGGATCTCAAGTTCAATATATGCTGAGATTGATGGA 771
|||||||||| | |||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 853 TCCGGGTTCGTC-GACCTTTCTGGTGGCTCACAAGTTCAATATATGCTGAAATTGATGGA 911
Query 772 GAGGAAATTGGCGTTGTTCACCAACGATGGCATCTATGGAGAAGAATTTATGATTTATAC 831
||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 912 GAGGAAATTGGTGTTGTTCATCGACGATGGCATCTATGGAGAAGAATTTATGATTTATAC 971
Query 832 CTTGGGAACAACCAGTTTGCAGTGGTAGAAAATCCTGGGTTTTGGAATTGGACATTTACA 891
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 CTGGGGAACAACCAGTTTGCAGTGGTAGAAAATCCTGGGTTTTGGAATTGGACATTTACA 1031
Query 892 GTGAAGGATGCTGATGGGGAAGTATTAGCCCAAATAGATCGTGATTGGAGGGGTTTTGGC 951
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1032 GTGAAGGATGCTGATGGGGAAGTCTTAGCCCAAATAGATCGTGATTGGAGAGGTTTTGGC 1091
Query 952 TTTGAGATATTCACAGATGCTGGGCAGTACGTGATCCGATTTGGAAAAGCTGATGCTGCA 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TTTGAGATATTCACAGATGCTGGGCAGTACGTGATCCGATTTGGAAAAGCTGATGCTGCA 1151
Query 1012 GCCAAAACCGGCCCTGCGACAATGATAGAAGAGTTAGAAGTGAAACGGCCATTGACTTTG 1071
||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1152 GCCAAGACCGGCCCTGCGACACTGGTAGAAGAGTTAGAAGTGAAACGGCCATTGACTTTG 1211
Query 1072 TCAGAAAGAGCTGTTGTCCTTACGCTTGCTATTTCACTAGATAATGATTACTTTTCAAGA 1131
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1212 TCAGAAAGAGCTGTTGTCCTTACGCTTGCGATTTCACTAGATAATGATTACTTTTCAAGA 1271
Query 1132 CATGGTGGCTGGGGAATACCATTCATGGCGGTGGGTGAGTAG 1173
||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1272 CATGGTGGCTGGGGAATCCCATTCATGGCGGTGGGTGAGTAG 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5