BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905858
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05260.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1574 0.0
> AT2G05260.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:1918289-1920042 FORWARD LENGTH=1379
Length=1379
Score = 1574 bits (852), Expect = 0.0
Identities = 1005/1080 (93%), Gaps = 6/1080 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTGATAGAGAAGAGTTTAACTTGTGTGGACCTTCACATCTCACAACTGTTGAT 60
||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 154 ATGGCCTCTGATAGAGAAGAGTTTAACTTGTGTGGACCTACACACCTCACAACTGTTGAT 213
Query 61 TGGGCAAATGAAGATCACCAGCGTTGTGTAGCAGCGTGTTTGGTTCAAGGAATATATATA 120
|||| ||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct 214 TGGGGAAATGAAGATCACCAACGTTGTGTAGCAGCTTGTTTGGTACAAGGAATCTATATA 273
Query 121 GTAGAGCGTGATCGTCAGCTTAAACGTGAAGGTTCTGAAGCTCTTGCACCTCCATGGTGG 180
||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 274 GTAGAGCAAGACCGTCAGCTTAAACGTGAAGGCACTGAAGCTCTTGCATCTCCATGGTGG 333
Query 181 GAATCCTTCAACTTTAAATTGATCCGTCACCTTAAAGACGATGCTGATTTCTCAATCTTT 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 334 GAATCATTCAACTTTAAATTGATCCGTCACCTTAAAGACGATGCTGATTTCTCCATCTTT 393
Query 241 GGCGGTATTTATGAATACAAATCGTTACAGCCAGATGTTGTGGACTCTGGAGTTCCGCGG 300
|| || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 394 GGTGGCATTTTTGAATACAAATCGTTACAGCCAGATGTTGTGGACTCTGGAGTTCCACGG 453
Query 301 TATGTTATAGCGTTTAGAGGGACTTTGACTAAAGCGGATTCGATAACCCGTGATATCGAG 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TATGTTATAGCCTTTAGAGGGACTTTGACTAAAGCGGATTCGATAACCCGTGATATCGAG 513
Query 361 TTGGATATCCATATTATCCGGAATGGGCTTCACCGAACATCCCGTTTTGAGATTGCTATG 420
||||||||||||||||| |||||||||||||||||||| || ||||||||||| || |||
Sbjct 514 TTGGATATCCATATTATACGGAATGGGCTTCACCGAACGTCGCGTTTTGAGATAGCGATG 573
Query 421 CAAGCTGTGAGAAGTATGGCTGATTCTGTTGGG-GCTTCAAGCTTTTGGCTAACAGGGCA 479
||||||||||||||||||||||||||||| ||| ||||| ||||||||||| || |||||
Sbjct 574 CAAGCTGTGAGAAGTATGGCTGATTCTGT-GGGAGCTTCGAGCTTTTGGCTTACGGGGCA 632
Query 480 TTCCCTGGGTGCAGCTATGGCGCTCCTCGCTGGCAAAACAATGGCAAAGACTGGAATTTA 539
||| | |||||||| |||||||| || ||||| |||||||||| |||| |||| ||||
Sbjct 633 TTCTTTAGGTGCAGCGATGGCGCTTCTTGCTGGTAAAACAATGGGGAAGAGTGGAGTTTA 692
Query 540 TATCAAATCTTTGTTGTTTAACCCTCCATATGTGTCTCCCCCGATCGAGAGGATAGCAAA 599
||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 693 TATTAAGTCATTGTTGTTTAACCCTCCTTATGTGTCTCCCCCGATTGAGAGGATAGCAAA 752
Query 600 CGAACGGGTTAGGCACGGGATTAGATTCGCAGGGAGCCTCATCACAGCAGGACTAGCGCT 659
|||||||||||||||||||||||||||||| ||||| || ||||| |||||||| || ||
Sbjct 753 CGAACGGGTTAGGCACGGGATTAGATTCGCGGGGAGTCTAATCACCGCAGGACTCGCTCT 812
Query 660 CTCCAGAACTCTTAAACAAACACAGCAGCCGCAGCAACAGCAACTGCAACTACAAAACTT 719
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 813 CTCTAGAACTCTTAAACAAACACAGCAGCCGCAACAACAGCAACTGCAACTACAAAACTT 872
Query 720 GACTGACGATCCGCTAGAGGCACTATCTTCGTGGCTCCCTAACATACATGTAAATCCAGG 779
|||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 873 GACTGAAGATCCACTAGAGGCATTATCTTCGTGGCTCCCTAACATACATGTAAATCCAGG 932
Query 780 GGACCATCTATGTTCAGAGTATATCGGATTTTTCGAGCACCGGGGAACA-ATGGAACAGA 838
||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||||||
Sbjct 933 GGACCATCTATGTTCGGAGTATATCGGGTTTTTCGAGCACCGGGGAA-ATATGGAACAGA 991
Query 839 TCGGGTATGGGGCCGGAATTGTGGAGCGGATGGCGATGCAGCATTCCTTGGGAGGTTTGC 898
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TTGGGTATGGAGCCGGAATTGTGGAGCGGATGGCGATGCAGCATTCCTTGGGAGGTTTGT 1051
Query 899 TAATGGATGCTATGGGAGTGAGCAATGCAGTGGAAGTAGAAGAGCCGGTTCATGTCATCC 958
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1052 TGATGGATGCGATGGGAGTGAGCAATGCAGTTGAAGTAGAAGAGCCGGTTCATGTCATCC 1111
Query 959 CATCTGCAAATCTTATAGTAAACAAGACCA-ATTCCGAAGATTACAAGGATGCTCATGGA 1017
||||||| ||||||||||||||||| |||| || |||||||||||||||| ||||||||
Sbjct 1112 CATCTGCTAATCTTATAGTAAACAAAACCATAT-CCGAAGATTACAAGGACGCTCATGGG 1170
Query 1018 ATACACCAATGGTGGAGAGATGACCAAGAATTGGTTTCCCACATTTACATGTACAAATAG 1077
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1171 ATACACCAATGGTGGAGAGATGACCAAGATTTGGTTTCCCACATTTACATGTACAAATAG 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52760772795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5