BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905861
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05330.1 | Symbols: | BTB/POZ domain-containing protein | c... 693 0.0
AT5G48510.1 | Symbols: | BTB/POZ domain-containing protein | c... 547 4e-155
> AT2G05330.1 | Symbols: | BTB/POZ domain-containing protein |
chr2:1938618-1939470 REVERSE LENGTH=648
Length=648
Score = 693 bits (375), Expect = 0.0
Identities = 488/541 (90%), Gaps = 14/541 (3%)
Strand=Plus/Plus
Query 137 TGGCATCAAGATCGGAGGTTTTTAAAAAGATGCTAGAATCAGACGAGTTCAAGAATTCAG 196
||||||||||||||| |||||| || |||||||||||||||||||||||||||| ||| |
Sbjct 104 TGGCATCAAGATCGGCGGTTTTGAAGAAGATGCTAGAATCAGACGAGTTCAAGACTTCGG 163
Query 197 CT-A--A---GGAAACAATCACTCTCTCAGAGATAAAACAAGAAGAGTTAGAAGCTTTTG 250
|| | | || |||||||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 164 CTAAGCAGGTGGGAACAATCACTCTCTTAGAGATGAAACAAGAAGAGCTAGAAGCTTTTG 223
Query 251 TTGAGTTTATATATAGTGATGGTTCTATGCTTTCTGCGAAAGTGAAGCAACACGCAATGG 310
|||||||| |||||||||||||||||||||||||| |||||||||||||||| || ||
Sbjct 224 TTGAGTTTCTATATAGTGATGGTTCTATGCTTTCTTCGAAAGTGAAGCAACATGCTCGGG 283
Query 311 TACTCTATCGTGCGGCTGACAAATACGAGATTCTCCAACTACGTGACCTATGCAGATCCG 370
||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| |
Sbjct 284 CACTCTATCGTGCGGCTGACAAATACGAGATTCTCCGACTACGAGAGCTATGCAGATCTG 343
Query 371 AGCTTATATCTTCTCTGAATTCGACGAATTCTCTTGA-CTTCATTGAGCTCGCCCAAACC 429
||||||||||||||||||||||||||||||||||| | |||| |||||||||| |||| |
Sbjct 344 AGCTTATATCTTCTCTGAATTCGACGAATTCTCTTAACCTTC-TTGAGCTCGCACAAATC 402
Query 430 CCTTTTGACAAAGTCCTCAACGATGCAGCCCTTAGTTATATTAAAACAAATGAATTTATG 489
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 403 CCTTTTGACAAAGTCCTCAACGATGCAGCCCTTAGTTATATTAAAACAAATGAACTTATG 462
Query 490 ATTGGTAGCTTTGATAAGTTCAAGCTGTTCGTTGATAATTACCCAAATCTTGCCGTGGAG 549
|| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 463 TTTCCTAGCTTTGATGAGTTCAAGTTGTTCGTTGATAATTACCCAAATCTTGCCGTGGAG 522
Query 550 ATAATGATGGCTTTTCTT-C-C----TCCTAGTAGAAGCTGTTCTAAGTGTGGTCTCAAA 603
|||||||||||| |||| | | |||||||| ||||||||||| ||||||||||| |
Sbjct 523 GTAATGATGGCTTCTCTTACTCGGACTCCTAGTACAAGCTGTTCTAGGTGTGGTCTCATA 582
Query 604 ACCTATCATAATCAGACTGGTACAAGCTGCTGTAACTGTGGTTTTGACTATCCTAGTAGC 663
||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||
Sbjct 583 ACCTATCATAATCAGACTGGTACAAGCTGTTGTAGTTGTGGTTTTGACTATCCTCGTCGC 642
Query 664 A 664
|
Sbjct 643 A 643
> AT5G48510.1 | Symbols: | BTB/POZ domain-containing protein |
chr5:19658080-19658882 FORWARD LENGTH=675
Length=675
Score = 547 bits (296), Expect = 4e-155
Identities = 489/580 (84%), Gaps = 22/580 (4%)
Strand=Plus/Plus
Query 1 ATGGCAACACAAACCAACAAAGACCATTTCTCTGGTGGACTTGCAAAGATCTTGGCAGAA 60
|||||||| | |||||||||||| |||||||| ||||||||||||||| | |||||||||
Sbjct 1 ATGGCAACTCCAACCAACAAAGAGCATTTCTCGGGTGGACTTGCAAAGGTTTTGGCAGAA 60
Query 61 AAATGGCAAGTTGACGTACGGCTAAAGGCAGTGGATAGTCATGAGGGTTCAGTTATCTCA 120
|||||||||||||||||| ||| |||||| | ||||| |||||||||||| ||||||
Sbjct 61 AAATGGCAAGTTGACGTAATGCTCAAGGCAAAGAATAGTGATGAGGGTTCAGCTATCTCT 120
Query 121 GCCCACAAAGTTATTCTGGCATCAAGATCGGAGGTTTTTAAAAAGATGCTAGAATCAGAC 180
||||||||| ||||||||||||||||||||||||||||||| || ||| | |||| ||||
Sbjct 121 GCCCACAAACTTATTCTGGCATCAAGATCGGAGGTTTTTAAGAATATGTTCGAATTAGAC 180
Query 181 GAGTTCAAGAATTC-AGCTAA----G-G-AAACAATCACTCTCTCAGAGATAAAACAAGA 233
|||||||||| ||| | |||| | | ||||||| ||||| |||||||| ||||| ||
Sbjct 181 GAGTTCAAGACTTCGA-CTAAACATGTGGAAACAATTACTCTTTCAGAGATGAAACATGA 239
Query 234 AGAGTTAGAAGCTTTTGTTGAGTTTATATATAGTGATGGTTCTATGCTTTCTGCGAAAGT 293
||||||||||||||||||||||||||||| |||||||| || ||||||||||| || ||
Sbjct 240 AGAGTTAGAAGCTTTTGTTGAGTTTATATGCAGTGATGGCTCAATGCTTTCTGCCAACGT 299
Query 294 GAAGCAACACGCAATGG-T-ACTCTATCGTGCGGCTGACAAATACGAGATTCTCCAACTA 351
||| ||||| || | | | |||||||| ||||||||| || || |||||||| || |||
Sbjct 300 GAAACAACATGC--TCGCTCACTCTATCTTGCGGCTGATAAGTATGAGATTCTGCATCTA 357
Query 352 CGTGACCTATGCAGATCCGAGCTTATATCTTCTCTGAATTCGACGAATTCTCTTGACTTC 411
|| |||||||||||| ||||||||||||||||||||| || | ||||||||||||| ||
Sbjct 358 CGAGACCTATGCAGAACCGAGCTTATATCTTCTCTGAGTTTGTTGAATTCTCTTGACCTC 417
Query 412 ATTGAGCTCGCCCAAACCCCTTTTGACAAAGTCCTCAACGATGCA-GCCCTT-AGTTATA 469
||| |||||| |||| |||||||||||||||||||||||||| | | || |||||||
Sbjct 418 CTTGTGCTCGCTCAAATCCCTTTTGACAAAGTCCTCAACGATGAAAGT--TTCAGTTATA 475
Query 470 TTAAAAC-AA-ATGAATTTATGATTGGTAGCTTTGATAAGTTCAAGCTGTTCGTTGATAA 527
| |||| || || || | | ||||| ||||| |||| |||||||| ||||||| |
Sbjct 476 TAAAAAATAATAT-AAGT-ACGATTGCTAGCTCTGATGAGTTCAAGTTGTTCGTCGCCGG 533
Query 528 TTACCCAAATCTTGCCGTGGAGATAATGATGGCTTT-TCT 566
| ||||||||||||||||||||||||||| || ||| |||
Sbjct 534 TAACCCAAATCTTGCCGTGGAGATAATGAAGG-TTTCTCT 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5