BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905866
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:19769... 996 0.0
AT2G05400.1 | Symbols: | Ubiquitin-specific protease family C1... 828 0.0
AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:19839... 612 2e-174
AT1G31370.1 | Symbols: | Ubiquitin-specific protease family C1... 191 1e-47
AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240... 174 1e-42
AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595... 165 7e-40
AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243... 145 9e-34
AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597... 132 7e-30
AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:21604... 122 4e-27
AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245... 121 1e-26
AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domai... 108 1e-22
AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564... 95.3 9e-19
AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589... 93.5 3e-18
> AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:1976918-1978553
FORWARD LENGTH=1082
Length=1082
Score = 996 bits (539), Expect = 0.0
Identities = 727/815 (89%), Gaps = 23/815 (3%)
Strand=Plus/Plus
Query 88 AGGCGTATTAAGGCCTTCCCCAAGGGATATT-A-TAA-C-AATGATAATATTTCTCTGTT 143
|||||||||| ||||| |||||||||| ||| | || | |||||| | ||||||||||
Sbjct 276 AGGCGTATTATGGCCTACCCCAAGGGA-ATTAACAAAGCTCATGATAGTTTTTCTCTGTT 334
Query 144 TGTAGACGTTCCTCATAAAGAATCTTTACCTATTGGATGGAGAAGACACGCTAAAATTTC 203
| || |||||||| |||| ||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 335 TCTAAACGTTCCTGATAACGAATCTTTACCTACTGGATGGCGAAGACACGCTAAAGTTTC 394
Query 204 TCTAACTTTAGTAAATCAATTTTCTGAAAAACTCTCTCAACTAAAAGAGAGACAGCAGTG 263
| | | ||||||||||||| ||| |||||||||||||||| ||||| || ||||| ||
Sbjct 395 TTTTAGTTTAGTAAATCAAGGTTCAGAAAAACTCTCTCAACGAAAAGTGACTCAGCACTG 454
Query 264 GTTTAATCAGAA-G-TTATCTAGCTGGGGGTTTCTGGCT-ATGATT-CCTCTCACTGAAC 319
|||| ||| || | || | || ||||||||||| | | |||||| || | ||| ||||
Sbjct 455 GTTTGTTCAAAAGGCTT-T-TACCTGGGGGTTTCCAG-TAATGATTACC-CACACCGAAC 510
Query 320 TGCATGCTAGAAA-GGGATTTCTGGTGAATGGAGAACTCAAAGTTGTTGCCAAGATAGAT 378
| | || | ||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 511 TTAACGCCA-AAATGGGATTTCTGGTAAATGGAGAACTCAAAGTTGTTGCTAAGATAGAG 569
Query 379 GTTCTTGAAGTTGTAGGAAAATTAGATGTTTCACAGGAATCGTT-ATCAGTAGTGGAAAC 437
||||||||||||||||| ||||||||||| ||| ||||||| || | || || || ||||
Sbjct 570 GTTCTTGAAGTTGTAGGGAAATTAGATGTATCAAAGGAATC-TTCACCAATAATGAAAAC 628
Query 438 CGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTTTGTT 497
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 629 CATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGATTCTGTGAAGCGTTTGTT 688
Query 498 TGAAAAACACCAAGATATTGTATCAAAGTTTCGTC-TAAAGAATCCATATTTGAAGACGG 556
||||||| ||| ||||||||||||||| ||||||| |||| ||||||||||||||||| |
Sbjct 689 TGAAAAAAACCTAGATATTGTATCAAAATTTCGTCTTAAA-AATCCATATTTGAAGACTG 747
Query 557 CGTGCATGAATGTCCTCCTGAGTTTGATCC-AAACGTTGTGTCAATCGCCTCAAGAACTC 615
||||||||||| ||||||||||||| | || ||||| |||||||||||||||||||||||
Sbjct 748 CGTGCATGAATCTCCTCCTGAGTTT-AACCGAAACGCTGTGTCAATCGCCTCAAGAACTC 806
Query 616 TCCAATGATGGTCTCTCTGATGCAGGTGTTGCACTGGAATATTTGATTGAAACAGGGCTT 675
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 807 TCCAATGATGGTCTCTCTGATGCAGGTGTTGCACTGGCATATTTGATAGAAACAGGGCTT 866
Query 676 AAGTTGGATTGGTTGGagaagaaacttggtgaagtaaaggaaaagaagaagaaagaagaG 735
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 867 AAGTTGGATTGGTTGGAGAAGAAACTTGATGAATTAAAGGAAAAGAAGAAGAAAGAAGAG 926
Query 736 GCGTGTTTAGTCCGGCT-ACGAGAAATGGACGAACAGCTTCAGCCATTTAAGAAGAGGTG 794
| ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 927 TCTTGTTTGGTCCGGCTGA-GAGAAATGGACGAACAGCTTCAGCCATTTAAGAAGAGGTG 985
Query 795 CTTAGACATTGAAGATCAGATAAGTAAGGAGAAACAAGAGTTGTTAGCAGCTAGAAAACC 854
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 986 CTTAGACATTGAAGATCAGATAAGTAAGGAGAAAGAAGAGTTGTTAGCAGCTAGAGAACC 1045
Query 855 TCTCTCTTTGTACGATGACATTGACAATATTGTCT 889
||||||||||||||||||||||||||||| |||||
Sbjct 1046 TCTCTCTTTGTACGATGACATTGACAATAATGTCT 1080
> AT2G05400.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr2:1974886-1976570 FORWARD LENGTH=1415
Length=1415
Score = 828 bits (448), Expect = 0.0
Identities = 747/888 (84%), Gaps = 34/888 (4%)
Strand=Plus/Plus
Query 3 GATAAATTGttttctaatttttttcgtccaatttagggtttacaggataatattttttta 62
|||||||||||||||||| ||||||||| ||| || |||||||| ||||||||| ||| |
Sbjct 304 GATAAATTGTTTTCTAATATTTTTCGTCTAATCTACGGTTTACA-GATAATATTCTTTGA 362
Query 63 ttgtttttctattgtttttGCTTGCAGGCGTAT-TAAGGCCTTCCCCAAGGGATATTATA 121
||| ||||| |||||||||||||||||||| | | |||||||||||||||||||| |||
Sbjct 363 TTG-CTTTCTTTTGTTTTTGCTTGCAGGCGT-TGTCAGGCCTTCCCCAAGGGATATAATA 420
Query 122 ACAATGATAATATTTCTCTGTTTGTAGACGTTCCTCATAAAGAATCTTTACCTATTGGAT 181
| |||| || ||||||||| | | ||||||||| ||||||||||||||||||||||||
Sbjct 421 AGGCTGATTATCTTTCTCTGTATCTCGACGTTCCTGATAAAGAATCTTTACCTATTGGAT 480
Query 182 GGAGAAGACACGCTAAAA-TTTCTCTAACTTTAGTAAATCAATTTTCTGAAAAACTCTCT 240
| ||||| ||| | |||| ||||| | |||||||||||| || |||| |||||||||||
Sbjct 481 GAAGAAGCCACAC-AAAATTTTCTTTTACTTTAGTAAATAAAATTTCGGAAAAACTCTC- 538
Query 241 C-AACTAAAAGAGAGACAGCAGTGGTTTAATCAGAAGTTAT-CTAG-CTGGGGGTTT-CT 296
| |||| ||||||| |||||||||||| || |||| | | || | |||||||||| |
Sbjct 539 CAAACTTAAAGAGACTCAGCAGTGGTTTGATAAGAA-TGCTCCT-GACTGGGGGTTTAC- 595
Query 297 GGCTATGATTC--CTCTCACTGAACTGCATGCTAGAA-AGGGATTTCTG-GTGAATGGAG 352
| |||| || | ||||||||||| ||||| ||| ||||| ||||| | ||| ||||
Sbjct 596 AGAAATGA-TCAGC-CTCACTGAACTTCATGC-GGAAGAGGGACTTCTGAG-GAACGGAG 651
Query 353 AACTCAAAGTTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGGAAAATTAGATGTTTCAC 412
|||||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 652 AACTCACCGTTGTTGCCAAGGTAGAGGTTCTTGAAGTTGTAGGAAAATTAGATGTATCAG 711
Query 413 AGGAATCGTT-ATCAGTAGTGGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCA 471
||||||| || | ||||| | |||||| ||||||||||||| ||||||||||||||||||
Sbjct 712 AGGAATC-TTCACCAGTAATTGAAACCATAGATGTCAATGGATTTCAAGTTCTTCCTTCA 770
Query 472 CAGGTAGAATCTGTGAAG-CGTTTGTTTGAAAAACACCAAGATATTGTATCAAAGTTTCG 530
|||||||||| || |||| | ||| ||||||| ||| | |||||||| |||||| || ||
Sbjct 771 CAGGTAGAATATGCGAAGTC-TTTATTTGAAAGACATCTAGATATTGCATCAAAATTCCG 829
Query 531 TCTAAAGAATCCATATTTGAAGACGGCGTGCATGAATGTCCTCCTGAGTTTGATCCAAAC 590
|| |||||||||||| | |||||||||| ||||||||||||| ||||||| | ||||||
Sbjct 830 TCCAAAGAATCCATACCTAAAGACGGCGTACATGAATGTCCTCTTGAGTTTAACCCAAAC 889
Query 591 GTTGTGTCAATCGCCTCAAGAACTCTCCAATGATGGTCTCTCTGATGCAGGTGTTGCACT 650
| | |||||||| |||||||||||||||||||||| ||||||||||||||| | |||| |
Sbjct 890 GATATGTCAATCTCCTCAAGAACTCTCCAATGATGATCTCTCTGATGCAGGCGCTGCATT 949
Query 651 GGAATATTTGATTGAAACAGGGCTTAAGTTGGATTGGTTGGagaagaaacttggtgaagt 710
|| |||||||| ||| ||||| || |||||||||||||||||||||||||| ||||||
Sbjct 950 GGCATATTTGAGAGAAGCAGGGTTTGAGTTGGATTGGTTGGAGAAGAAACTTAATGAAGT 1009
Query 711 aaaggaaaagaagaagaaagaagaGGCGTGTTTAGTCCG-GCTACGAGAAATGGACGAAC 769
|||||||||||| |||||||||||||| ||||| | ||| | ||| ||| ||||||||||
Sbjct 1010 AAAGGAAAAGAAAAAGAAAGAAGAGGCTTGTTTGG-CCGAGATACAAGACATGGACGAAC 1068
Query 770 A-GCTTCAGCCATTTAAGAAGAGGTGCTTAGACATTGAAGATCAGATA-AGTAAGGAGAA 827
| | || ||||||| ||||||| || ||||||| | |||| ||||||| | |||| ||||
Sbjct 1069 ATG-TTAAGCCATTGAAGAAGAAGTACTTAGACCTGGAAGCTCAGATAGA-TAAGAAGAA 1126
Query 828 A-CAAGAGTTGTTAGCAGCTAGAAAACCTCTCTCTTTGTACGATGACA 874
|| |||||| |||| || ||| |||||||| ||| |||||||||
Sbjct 1127 GGCA-GAGTTGCTAGCTGCAAGAGCTCCTCTCTCCTTGAACGATGACA 1173
> AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:1983901-1985341
FORWARD LENGTH=894
Length=894
Score = 612 bits (331), Expect = 2e-174
Identities = 556/660 (84%), Gaps = 34/660 (5%)
Strand=Plus/Plus
Query 129 TAAT-ATTT--CTCTGT-TTGTAGACGTTCCTCATA-AAGAATCTTTACCTATTGGATGG 183
|||| |||| |||||| || || ||||| || ||| | ||||||| ||||||||||||
Sbjct 168 TAATAATTTGGCTCTGTATT-TAAACGTTGCTAATAGTA-AATCTTTCCCTATTGGATGG 225
Query 184 AGAAGACACGCTAAAATTTCTCTAACTTTAGTAAATCAATTTTCTGAAAAACTCTCTC-A 242
| ||||||| ||||| ||||||| ||||||||||||||| || ||||||||||| | |
Sbjct 226 ACAAGACACACTAAATTTTCTCTTACTTTAGTAAATCAAAAATCAGAAAAACTCTC-CAA 284
Query 243 ACTAAAAGAGA-GACAGCAGTGGTTTAATCAGAAGT-TATCTAGCTGGGGGTTTCTGGCT 300
||||| ||| | ||| || |||||| |||| |||| || ||||| ||||||||| |||
Sbjct 285 ACTAACAGA-ATCACAACACTGGTTTGATCATAAGTCTA-CTAGCCGGGGGTTTCCAGCT 342
Query 301 ATGATTCCTCTCACTGAA-CTGCATGCTAGA-AAGGGATTTCTGGTGAATGGAGAACTCA 358
||||||||||||||| || |||||| ||| | |||||||||||||||||||||||||||
Sbjct 343 ATGATTCCTCTCACT-AATCTGCATACTA-ATGAGGGATTTCTGGTGAATGGAGAACTCA 400
Query 359 AAGTTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGGAAAATTAGATGTTTCACAGGAAT 418
||||||||||| |||| ||||||||||||||||||||||||||||| ||| || |||
Sbjct 401 CCCTTGTTGCCAAGGTAGAGGTTCTTGAAGTTGTAGGAAAATTAGATGTATCAAAGAAAT 460
Query 419 CGTT-ATCAGTAGTGGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTA 477
| || | ||||| |||||||| ||||||||||||||||||||||||||||| || | ||
Sbjct 461 C-TTCACCAGTAATGGAAACCATAGATGTCAATGGGTTTCAAGTTCTTCCT-CAAA--TA 516
Query 478 GAATCTGTGAAGCGTTTGTTTGAAAAACACCAAGATATTGTATC-AAAGTTTCGTCTAAA 536
||||| ||||| |||||||||| |||||||| |||||||| ||| ||| ||||||| |||
Sbjct 517 GAATCGGTGAATCGTTTGTTTGCAAAACACCTAGATATTGCATCCAAA-TTTCGTCCAAA 575
Query 537 GAATCCATATTTGAAGACGGCGTGCATGAATGTCCTCCTGAGTTTGATCCAA-ACGTTGT 595
||| |||||| |||||||||||| ||||||||| ||||| || || | |||| ||| |||
Sbjct 576 GAAACCATATATGAAGACGGCGTACATGAATGTTCTCCTAAGCTTAA-CCAAGACGCTGT 634
Query 596 GTCAATCGCCTCAAGAACTCTCCAATGATGGTCTCTCTGATGCAGGTGTTGCACTGGA-A 654
| |||||||||||||| ||||||||||||| | | |||| |||||| | ||||||| | |
Sbjct 635 GCCAATCGCCTCAAGATCTCTCCAATGATGATATATCTGGTGCAGGCGCTGCACTG-ACA 693
Query 655 TATTTGATTGAAACAGGGCTTAAGTTGGATTGGTTGGagaagaaacttggtga-agtaaa 713
||||||| ||| ||||| ||||||||||||||||||||||||||| |||||| | ||||
Sbjct 694 TATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACATGGTGAGA-TAAA 752
Query 714 ggaaaagaagaagaaagaagaGGCGTGTTT-AGTCCGGCTACGAGAAATGGACGAA-CAG 771
||||||||||||||| |||||||| | ||| | | |||| | ||||||||| ||| |||
Sbjct 753 GGAAAAGAAGAAGAAGGAAGAGGCTTCTTTGAAAC-GGCTGCAAGAAATGGA-GAAACAG 810
> AT1G31370.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr1:11238298-11239363 REVERSE LENGTH=582
Length=582
Score = 191 bits (103), Expect = 1e-47
Identities = 185/223 (83%), Gaps = 11/223 (5%)
Strand=Plus/Plus
Query 333 GGGATTTCTGGTGAATGGAGAACTCAAAG-TTGTTGCCAAGATAGATGTTCTTGAAGTTG 391
||| ||| |||||||||||||| || ||| |||||||| || | | ||||||||||||||
Sbjct 223 GGG-TTTATGGTGAATGGAGAAGTC-AAGATTGTTGCCGAGGTTGGTGTTCTTGAAGTTG 280
Query 392 TAGGAAAATTAGATGT-TTCACAGGAATCGTT-ATCAGTAG-TGGAAACCGTAGATGTCA 448
| | |||| |||||| || | |||| | || || ||| | |||||| | | |||||||
Sbjct 281 TTCGCAAATCAGATGTGTT-AGTGGAAAC-TTCATTAGT-GATGGAAAGCATCGATGTCA 337
Query 449 ATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTTTGTTTGAAAAACACC 508
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 338 ATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGAGTTTGTTTGAAAAGCACC 397
Query 509 AAGATATTGTATC-AAAGTTTCGTCTAAAGAATCCATATTTGA 550
||| |||| ||| ||| || |||| |||||| ||| || |||
Sbjct 398 CAGACATTGCATCGAAA-TTCCGTCCAAAGAACCCACATCTGA 439
> AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240451-11241099
REVERSE LENGTH=528
Length=528
Score = 174 bits (94), Expect = 1e-42
Identities = 182/223 (82%), Gaps = 11/223 (5%)
Strand=Plus/Plus
Query 333 GGGATTTCTGGTGAATGGAGAACTCAAAG-TTGTTGCCAAGATAGATGTTCTTGAAGTTG 391
||| ||| |||||||||||||| || ||| ||||||| || | | ||||||||||||||
Sbjct 37 GGG-TTTATGGTGAATGGAGAAGTC-AAGATTGTTGCTGAGGTTGGTGTTCTTGAAGTTG 94
Query 392 TAGGAAAATTAGATGT-TTCACAGGAATCGTT-ATCAGTAG-TGGAAACCGTAG-ATGTC 447
| || |||| |||||| || | ||||| | || || ||| | |||||| | | | |||||
Sbjct 95 TTGGCAAATCAGATGTGTT-AGAGGAAAC-TTCATTAGT-GATGGAAAGCAT-GTATGTC 150
Query 448 AATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTTTGTTTGAAAAACAC 507
|||||||||||||||||||||||||||||||||| ||||||| || |||||||||| |||
Sbjct 151 AATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATTTGTGAAGAGTCTGTTTGAAAAGCAC 210
Query 508 CAAGATATTGTATCAAAGTTTCGTCTAAAGAATCCATATTTGA 550
| |||||| | |||||| | | ||| ||||| ||| || |||
Sbjct 211 CCAGATATCGAATCAAAACTCCATCTGAAGAACCCACATATGA 253
> AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595774-21596538
REVERSE LENGTH=660
Length=660
Score = 165 bits (89), Expect = 7e-40
Identities = 247/321 (77%), Gaps = 20/321 (6%)
Strand=Plus/Plus
Query 425 CAGTAGTGGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTG 484
||||| ||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 CAGTAAAGGAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTG 265
Query 485 TGAAGCGTTTGTTTGAAAAACA-CCAAGA-TATTGTATCAAAGTTTCGTCTAAAGAATCC 542
||||| || | ||||||| ||| ||| || | ||| |||||| || |||| ||||||||
Sbjct 266 TGAAGTGTATATTTGAAAGACATCCA-GACT-TTGCATCAAAATTCCGTCCAAAGAATCG 323
Query 543 ATATTTGAAGACGGCGTGCATGAATGTCCTCCTGAGTT-TGATCCAA-ACGTTGTGTCAA 600
| |||||| | | | ||||| ||||||||| || | || || |||||||| ||
Sbjct 324 GCACTTGAAGTCAACATACATGACTGTCCTCCT-AGGACTAATT-AAGACGTTGTGCCAG 381
Query 601 TCGCCTCAAGAACTCTCCAATGATGGTCTCT-CTGATGCAGGTGTTGCACTGGAATATTT 659
| ||| | || ||| | | |||| ||| | || ||| |||||| || ||| |
Sbjct 382 TTACCTGAGGAGCTCACTGACGATGATCTGGAC-GAAGCATCCGTTGCAGTGTCATACGT 440
Query 660 GATTGAAACA-GG-G-CTTAAG-TTGGATTGGTTGGagaagaaacttg-gtgaagtaaag 714
| |||| | || | |||||| |||||||||||||||||||| |||| | ||||| |||
Sbjct 441 G---GAAA-ATGGTGGCTTAAGATTGGATTGGTTGGAGAAGAAGCTTGCG-GAAGTTAAG 495
Query 715 gaaaagaagaagaaagaagaG 735
| |||||||||||||| ||||
Sbjct 496 GCAAAGAAGAAGAAAGTAGAG 516
> AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243191-11244392
REVERSE LENGTH=807
Length=807
Score = 145 bits (78), Expect = 9e-34
Identities = 165/205 (80%), Gaps = 13/205 (6%)
Strand=Plus/Plus
Query 333 GGGATTTCTGGTGAATGGAGAACTCAAAG-TTGTTGCCAAGATAGATGTTCTTGAAGTTG 391
||| |||||||||||||| || || ||| |||||| | || ||| |||||||||||| |
Sbjct 361 GGG-TTTCTGGTGAATGGTGATGTC-AAGATTGTTGTCGAGGTAGGTGTTCTTGAAGTCG 418
Query 392 TAGGAAAATTAGATGT-TTCACAGGAATCGTTATCAG-T-AGTGGAAACCGTAGATGTCA 448
| || |||| |||||| || | ||||| | |||| || | | | |||| | | ||| |||
Sbjct 419 TTGGCAAATCAGATGTGTT-AGAGGAAACTTTATTAGTTCA-T-GAAAGCATCGATATCA 475
Query 449 ATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTT-TGTTTGAAAAACAC 507
|||||||||||||||||||||||||||||||||||||||| | | | ||||| || |||
Sbjct 476 ATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAA-CAATCTCTTTGAGAAGCAC 534
Query 508 CAAGATATTGTATCA-AAGTTTCGT 531
| ||| || |||||| || ||||||
Sbjct 535 CCAGACATCGTATCAGAA-TTTCGT 558
> AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597799-21599568
REVERSE LENGTH=1236
Length=1236
Score = 132 bits (71), Expect = 7e-30
Identities = 227/299 (76%), Gaps = 24/299 (8%)
Strand=Plus/Plus
Query 442 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTTTGTTTGAA 501
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 624 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTATATTTGAA 683
Query 502 AAACACC-AAGATATTGTATCA-AAGTTTCGTCTAAAGAATCCATATTTGAAGACGGCGT 559
| | ||| || | |||| |||| |||| | || || ||| |||| | ||||||| |
Sbjct 684 ATATACCCAA-ACATTGCATCAGAAGTCCCTTC-AATGAAACCATGTCTGAAGACATTAT 741
Query 560 GCATGAATGTCCTCCT-GAGTTTGATCCAAACGTTGTGTCAA-TCGCCT-CAAGAACTCT 616
||||||||| ||||| | | | || ||||| |||| ||| | |||| | || ||||
Sbjct 742 ACATGAATGTACTCCTCG-GAATAATTGAAACGCTGTGCCAACT-GCCTGCG-GAGCTCT 798
Query 617 CCAATGA-TGGTCTCTCTGATGCAGGTGTTGCACTGGAATATTTGATTGAAACA-GG-G- 672
| || | || ||| ||| ||| ||||| | |||| | | | ||| || |
Sbjct 799 CTGAT-ACTGATCTGGATGAAGCATCCATTGCAGTTT--TATTCG-T-GTCACAAGGTGG 853
Query 673 CTT-AA-GTTGGATTGGTTGGagaagaaacttg-gtgaagtaaaggaaaagaagaagaa 728
||| || || |||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 854 CTTTAAAGT-GGATTGGTTGGAGAAGAAGCTCAAG-GAAGTAAAGGAAAAGAAGAAGAA 910
> AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:21604871-21606229
REVERSE LENGTH=987
Length=987
Score = 122 bits (66), Expect = 4e-27
Identities = 234/312 (75%), Gaps = 24/312 (8%)
Strand=Plus/Plus
Query 432 GGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGA-AGC 490
||||| | | || ||||| || |||||||||||||||||||||||||||||||||| | |
Sbjct 540 GGAAAGCATGGAGGTCAACGGATTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGA-C 598
Query 491 GTT-TGTTTGAAAAACACCAAGATATTGTATCA-AAGTTTCGT-CTAAAGAATCCA-TAT 546
|| | ||||||| ||||| || |||| |||| || || ||| | |||||| ||| |||
Sbjct 599 -TTATATTTGAAAGACACCCTGACATTGCATCAGAA-TTCCGTGC-AAAGAA-CCAATAT 654
Query 547 TTGAAGACGGCGTGCATGAATGTCCTCCTGAGT-TTGATCCAAACGTTGTGTCAATCGCC 605
||| || || |||||| || |||| || || ||| | | ||| |||| || || |
Sbjct 655 CTGAGGAAAGCATGCATGGATTTCCTTCTCAGCCTTGTTG-AGACGCTGTGCCAGTCAC- 712
Query 606 T-CAAGAACTCTCCAATGATGGTCTCTCTG-ATGCAGGTGTTGCACTGGA-ATATTTGAT 662
| ||||| |||||||||| | ||| | || | |||| | || ||| | ||| ||||
Sbjct 713 TGCAAGAGTTCTCCAATGAAGATCT-TGTGGAAGCAGACATCGCGCTG-ACATACTTGAA 770
Query 663 TGAAACAGGGCTT-AAGTTGGATTGGTTGGagaagaaacttggtg-aagtaa-aggaaaa 719
|| | ||| || ||| |||| ||||||||||| ||| |||| |||||| || | ||
Sbjct 771 AGATGCGGGG-TTCAAGGTGGACTGGTTGGAGAA-AAAGTTGGACCAAGTAAGAG-ATAA 827
Query 720 gaagaagaaaga 731
|||| |||||||
Sbjct 828 GAAGGAGAAAGA 839
> AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245225-11246481
REVERSE LENGTH=837
Length=837
Score = 121 bits (65), Expect = 1e-26
Identities = 162/207 (78%), Gaps = 13/207 (6%)
Strand=Plus/Plus
Query 333 GGGATTTCTGGTGAATGGAGAACTCAAAG-TTGTTGCCAAGATAGATGTTCTTGAAGTTG 391
||| ||| |||| | ||| || || ||| |||||||| || | | ||||||||||||||
Sbjct 352 GGG-TTTTTGGTTAGTGGCCAAGTC-AAGATTGTTGCCGAGGTTGGTGTTCTTGAAGTTG 409
Query 392 TAGGAAAATTAGATGT-TTCACAGGAATCGTTATCAG-TAGTGGAAACCGT-AGATGTCA 448
| || || | |||||| || | ||||| | || | || || ||| | | | | ||||||
Sbjct 410 TTGGCAAGTCAGATGTGTT-AGAGGAAACTTTGTTAGTTAATGG-AGGCATCA-ATGTCA 466
Query 449 ATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTT-TGTTTGAAAAA-CA 506
|||||||||||||||||||||||||||||||||||||||| | | | || ||||| ||
Sbjct 467 ATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAA-CAATCTCTTC-AAAAATCA 524
Query 507 CCAAGATATTGTATCAAAGTTTCGTCT 533
|| ||| |||| |||||| || |||||
Sbjct 525 CCCAGACATTGCATCAAACTTCCGTCT 551
> AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domain-containing
protein | chr3:16343333-16346027 FORWARD LENGTH=1695
Length=1695
Score = 108 bits (58), Expect = 1e-22
Identities = 149/192 (78%), Gaps = 10/192 (5%)
Strand=Plus/Plus
Query 439 GTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTTTGTTT 498
||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 520 GTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAGCGTATATTC 579
Query 499 GAAAAACACCAAGATATTGTATCAAAGTTTCGT-CTAAAGAATCCAT-ATTTGAAGACGG 556
|||| ||||| | | || | || | |||| || | |||||| ||| | |||| | |
Sbjct 580 GAAAGACACCCATACATGGCATTAGAGTTCCGAGC-AAAGAA-CCAACAGTTGAGGGCAT 637
Query 557 CGTGCATGAATGTCCTCCTGAGTTTGATCCAA-ACGTTGTGTCAATCGCCT-CAAGA-AC 613
| || || ||||||||||| || | ||| || |||||||| || || | | ||||| |
Sbjct 638 CATGTATAAATGTCCTCCTCAGCCTAATC-AAGACGTTGTGCCAGTCAC-TGCAAGATAT 695
Query 614 TCTCCAATGATG 625
| |||| |||||
Sbjct 696 T-TCCATTGATG 706
> AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564450-21566482
REVERSE LENGTH=1636
Length=1636
Score = 95.3 bits (51), Expect = 9e-19
Identities = 222/302 (74%), Gaps = 22/302 (7%)
Strand=Plus/Plus
Query 432 GGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGA-ATCT-GTGAAG 489
||||||| | ||| ||||||||||||||||||||||||||||||| || | || |||| |
Sbjct 962 GGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GACA-CTTGTGA-G 1018
Query 490 C-GTTTGTTTGAAAAAC-ACCAAGATATTGTATCAAAGTTTCG-T-CTAAAGAATCC-AT 544
| || | ||| ||||| ||| ||| |||| || | | ||| | | |||||| || |
Sbjct 1019 CCGTAT-TTTAAAAAAATACCCAGACATTGCATTAG-GATTCAATGC-AAAGAA-CCGAC 1074
Query 545 ATTTGAAGACGGCGTGCATGAATGTCCTCCTGAGTTTGATCCAAACGTTGTGTCAATCGC 604
|| ||| ||| || ||||||||||||||| | || | ||| | || |||| || || |
Sbjct 1075 ATCTGAGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAGACACTGTGCCAGTCAC 1134
Query 605 CTCAAGAACTCTCCA-ATGATGGTCTCTCTGATGCAGGTGTTGCACTGGAATATTTG-AT 662
| || || ||||| | | || | | | ||| |||| |||||| | ||| || |
Sbjct 1135 CACAGGAGCTCTC-AGACGAAGATATGGATGAAGCAGACAATGCACTAGTATACGTGCAA 1193
Query 663 TGAAACAGGGCTT-AAGTTGGATTGGTTGGagaagaaacttggtg-aagtaaaggaaaag 720
|| |||| ||| ||| ||||||||||||| ||||| || | | ||||||| ||||||
Sbjct 1194 -GATGCAGG-CTTTAAGGTGGATTGGTTGGACAAGAAGCT-GAAGGAAGTAAAAGAAAAG 1250
Query 721 aa 722
||
Sbjct 1251 AA 1252
> AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589071-21590401
REVERSE LENGTH=978
Length=978
Score = 93.5 bits (50), Expect = 3e-18
Identities = 77/89 (87%), Gaps = 6/89 (7%)
Strand=Plus/Plus
Query 432 GGAAACCGTAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGA-AGC 490
||||| | | ||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 552 GGAAAGCATTGATGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGA-C 610
Query 491 GT-TTGTTTGAAAAACA-CCAAGATATTG 517
|| || ||| ||||||| ||| || ||||
Sbjct 611 GTATT-TTTAAAAAACATCCA-GACATTG 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5