BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905868
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05400.1 | Symbols: | Ubiquitin-specific protease family C1... 784 0.0
AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:19769... 747 0.0
AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:19839... 640 0.0
AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243... 172 4e-42
AT1G31370.1 | Symbols: | Ubiquitin-specific protease family C1... 172 4e-42
AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240... 156 4e-37
AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595... 148 7e-35
AT3G58430.1 | Symbols: | TRAF-like family protein | chr3:21613... 145 9e-34
AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:21604... 141 1e-32
AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245... 139 4e-32
AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597... 115 7e-25
AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589... 89.8 4e-17
> AT2G05400.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr2:1974886-1976570 FORWARD LENGTH=1415
Length=1415
Score = 784 bits (424), Expect = 0.0
Identities = 659/770 (86%), Gaps = 26/770 (3%)
Strand=Plus/Plus
Query 124 CCCAAGGGATATAATAAGGCTAATTGT-TTGTCTCTGTATCTAC-ATGTTCCGGATATTG 181
||||||||||||||||||||| ||| | || ||||||||||| | | ||||| |||| |
Sbjct 405 CCCAAGGGATATAATAAGGCTGATTATCTT-TCTCTGTATCT-CGACGTTCCTGATAAAG 462
Query 182 AATCTTTGCCTATTGGATGGAGAATACACGCTAAATTTTCTCTAACATTAGTAAATCAAT 241
||||||| ||||||||||| |||| ||| | ||||||||| | || ||||||||| ||
Sbjct 463 AATCTTTACCTATTGGATGAAGAAGCCACACAAAATTTTCTTTTACTTTAGTAAAT-AAA 521
Query 242 A-TTCAGG-AAAACTCTCCAAA-ATAAGAGAGACTCAGCACTGGTTTGATCAGAAGGCTC 298
| ||| || ||||||||||||| ||| |||||||||||| ||||||||| |||| ||||
Sbjct 522 ATTTC-GGAAAAACTCTCCAAACTTAA-AGAGACTCAGCAGTGGTTTGATAAGAATGCTC 579
Query 299 CTAACTGGGGGTTTCA-AGAAATGATTACCCTCACTGAACTTCATGCCAAAGCGGGA-TT 356
|| ||||||||||| | ||||||||| | |||||||||||||||||| ||| |||| ||
Sbjct 580 CTGACTGGGGGTTT-ACAGAAATGATCAGCCTCACTGAACTTCATGCGGAAGAGGGACTT 638
Query 357 GGTG-GTGAATGGAGAACTCACAATTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGGAA 415
|| | ||| ||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 639 -CTGAG-GAACGGAGAACTCACCGTTGTTGCCAAGGTAGAGGTTCTTGAAGTTGTAGGAA 696
Query 416 AATTAGATGGCTCAGAGGAATCTTCATCAGTAGTGGAAACGGTAGATGTCAATGGCTTTC 475
||||||||| ||||||||||||||| ||||| | ||||| ||||||||||||| ||||
Sbjct 697 AATTAGATGTATCAGAGGAATCTTCACCAGTAATTGAAACCATAGATGTCAATGGATTTC 756
Query 476 AAGTTCTTCCTTCACAGGTAGAATCA-GTGAAG-CTTTTGTTTGAAAGTCACCAAGATTT 533
|||||||||||||||||||||||| | | |||| |||| |||||||| || | |||| |
Sbjct 757 AAGTTCTTCCTTCACAGGTAGAAT-ATGCGAAGTCTTTA-TTTGAAAGACATCTAGATAT 814
Query 534 TGCATCAAAATTTCGTCTAAATAATCCATATATGAAGACGGCATACATGAATGTTCTCTT 593
|||||||||||| |||| ||| |||||||| | |||||||| ||||||||||| |||||
Sbjct 815 TGCATCAAAATTCCGTCCAAAGAATCCATACCTAAAGACGGCGTACATGAATGTCCTCTT 874
Query 594 GAGCTTAACCCAAACGCTATGCCGATCGCCTCAAGAACTCTCCAATGATGGTCTCTTTGA 653
||| |||||||||||| |||| | ||| |||||||||||||||||||||| ||||| |||
Sbjct 875 GAGTTTAACCCAAACGATATGTCAATCTCCTCAAGAACTCTCCAATGATGATCTCTCTGA 934
Query 654 TGCGGGCGCTGCACTGTCATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGagaa 713
||| ||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 935 TGCAGGCGCTGCATTGGCATATTTGAGAGAAGCAGGGTTTGAGTTGGATTGGTTGGAGAA 994
Query 714 gaaacttggtgaagtaaaggaaaagaagaagaaagaagaGGCTTGTTTGGCCCG-GCTTC 772
||||||| |||||||||||||||||| |||||||||||||||||||||||| | | | |
Sbjct 995 GAAACTTAATGAAGTAAAGGAAAAGAAAAAGAAAGAAGAGGCTTGTTTGGCC-GAGATAC 1053
Query 773 ACGAAATGGACGAAAAACTTCAGCCATTTAAGAAGAAGTGCTTAGACCTTGAAGCTCTA- 831
| || ||||||||| | || ||||||| |||||||||| ||||||||| ||||||| |
Sbjct 1054 AAGACATGGACGAACATGTTAAGCCATTGAAGAAGAAGTACTTAGACCTGGAAGCTC-AG 1112
Query 832 ATAGATAAGGAGAAGG-AGGAGTTGTTAGAAGCTAGAGCTCCTCTCCCCT 880
||||||||| |||||| || ||||| ||| || |||||||||||| |||
Sbjct 1113 ATAGATAAGAAGAAGGCAG-AGTTGCTAGCTGCAAGAGCTCCTCTCTCCT 1161
> AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:1976918-1978553
FORWARD LENGTH=1082
Length=1082
Score = 747 bits (404), Expect = 0.0
Identities = 649/767 (85%), Gaps = 17/767 (2%)
Strand=Plus/Plus
Query 120 CTATCCCAAGGG-ATATAATAAGGCT-A--ATTGTTTGTCTCTGTATCTACATGTTCCGG 175
||| |||||||| || ||| || ||| | || |||| ||||||| |||| | ||||| |
Sbjct 290 CTACCCCAAGGGAAT-TAACAAAGCTCATGATAGTTTTTCTCTGTTTCTAAACGTTCCTG 348
Query 176 ATATTGAATCTTTGCCTATTGGATGGAGAATACACGCTAAATTTTCTCTAACATTAGTAA 235
||| |||||||| |||| ||||||| ||| |||||||||| ||||| | | |||||||
Sbjct 349 ATAACGAATCTTTACCTACTGGATGGCGAAGACACGCTAAAGTTTCTTTTAGTTTAGTAA 408
Query 236 ATCAATATTCAGGAAAACTCTC-CAAAATAAGAGAGACTCAGCACTGGTTTGATCAGAAG 294
||||| ||||| ||||||||| | || || || ||||||||||||||||| ||| |||
Sbjct 409 ATCAAGGTTCAGAAAAACTCTCTC-AACGAAAAGTGACTCAGCACTGGTTTGTTCAAAAG 467
Query 295 GCTCCTAACTGGGGGTTTCAAGAAATGATTACCCTCACTGAACTTCATGCCAAAGCGGGA 354
||| || ||||||||||| || ||||||||||| ||| |||||| | |||||| ||||
Sbjct 468 GCTTTTACCTGGGGGTTTCCAGTAATGATTACCCACACCGAACTTAACGCCAAAATGGGA 527
Query 355 TTGGTGGTGAATGGAGAACTCACAA-TTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGG 413
|| |||| ||||||||||||| || ||||||| |||||||| |||||||||||||||||
Sbjct 528 TTTCTGGTAAATGGAGAACTCA-AAGTTGTTGCTAAGATAGAGGTTCTTGAAGTTGTAGG 586
Query 414 AAAATTAGATGGCTCAGAGGAATCTTCATCAGTAGTGGAAACGGTAGATGTCAATGGCTT 473
|||||||||| ||| ||||||||||| || || || |||| ||||||||||||| ||
Sbjct 587 GAAATTAGATGTATCAAAGGAATCTTCACCAATAATGAAAACCATAGATGTCAATGGGTT 646
Query 474 TCAAGTTCTTCCTTCACAGGTAGAATCAGTGAAGCTTTTGTTTGAAAGTCACCAAGATTT 533
|||||||||||||||||||||||| || ||||||| ||||||||||| ||| |||| |
Sbjct 647 TCAAGTTCTTCCTTCACAGGTAGATTCTGTGAAGCGTTTGTTTGAAAAAAACCTAGATAT 706
Query 534 TGCATCAAAATTTCGTC-TAAATAATCCATATATGAAGACGGCATACATGAATGTTCTCT 592
|| |||||||||||||| |||| ||||||||| ||||||| || | ||||||| | |||
Sbjct 707 TGTATCAAAATTTCGTCTTAAA-AATCCATATTTGAAGACTGCGTGCATGAATCTCCTCC 765
Query 593 TGAGCTTAACCCAAACGCTATGCCGATCGCCTCAAGAACTCTCCAATGATGGTCTCTTTG 652
|||| |||||| ||||||| || | |||||||||||||||||||||||||||||||| ||
Sbjct 766 TGAGTTTAACCGAAACGCTGTGTCAATCGCCTCAAGAACTCTCCAATGATGGTCTCTCTG 825
Query 653 ATGCGGGCGCTGCACTGTCATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGaga 712
|||| || | ||||||| ||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 826 ATGCAGGTGTTGCACTGGCATATTTGATAGAAACAGGGCTTAAGTTGGATTGGTTGGAGA 885
Query 713 agaaacttggtgaagtaaaggaaaagaagaagaaagaagaGGCTTGTTTGGCCCGGCTTC 772
||||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 886 AGAAACTTGATGAATTAAAGGAAAAGAAGAAGAAAGAAGAGTCTTGTTTGGTCCGGCTGA 945
Query 773 -ACGAAATGGACGAAAAACTTCAGCCATTTAAGAAGAAGTGCTTAGACCTTGAAGCTCTA 831
| |||||||||||| | ||||||||||||||||||| |||||||||| |||||| || |
Sbjct 946 GA-GAAATGGACGAACAGCTTCAGCCATTTAAGAAGAGGTGCTTAGACATTGAAGATC-A 1003
Query 832 -ATA-GATAAGGAGAAGGAGGAGTTGTTAGAAGCTAGAGCTCCTCTC 876
||| | ||||||||| || |||||||||| |||||||| ||||||
Sbjct 1004 GATAAG-TAAGGAGAAAGAAGAGTTGTTAGCAGCTAGAGAACCTCTC 1049
> AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:1983901-1985341
FORWARD LENGTH=894
Length=894
Score = 640 bits (346), Expect = 0.0
Identities = 556/657 (85%), Gaps = 16/657 (2%)
Strand=Plus/Plus
Query 137 ATAAGGCTAATTGTTTGTCTCTGTATCTACATGTTCCGGATATTGAATCTTTGCCTATTG 196
||| ||||||| |||| |||||||| || | ||| | ||| | ||||||| |||||||
Sbjct 161 ATAGGGCTAATAATTTGGCTCTGTATTTAAACGTTGCTAATAGTAAATCTTTCCCTATTG 220
Query 197 GATGGAGAATACACGCTAAATTTTCTCTAACATTAGTAAATCAATATTCAGGAAAACTCT 256
|||||| || |||| ||||||||||||| || |||||||||||| | |||| ||||||||
Sbjct 221 GATGGACAAGACACACTAAATTTTCTCTTACTTTAGTAAATCAAAAATCAGAAAAACTCT 280
Query 257 CCAAAATAAGAGAGA-CTCAGCACTGGTTTGATCAGAAGGCTCCTAACTGGGGGTTTCAA 315
||||| ||| ||| | | || |||||||||||||| ||| || ||| | ||||||||| |
Sbjct 281 CCAAACTAACAGA-ATCACAACACTGGTTTGATCATAAGTCTACTAGCCGGGGGTTTCCA 339
Query 316 GAAATGATTACC-CTCACTGAA-CTTCATGCCAAAGCGGGATTGGTGGTGAATGGAGAAC 373
| |||||| || |||||| || || ||| | || | |||||| |||||||||||||||
Sbjct 340 GCTATGATT-CCTCTCACT-AATCTGCATACTAATGAGGGATTTCTGGTGAATGGAGAAC 397
Query 374 TCACAATTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGGAAAATTAGATGGCTCAGAGG 433
|||| ||||||||||| |||| |||||||||||||||||||||||||||| ||| ||
Sbjct 398 TCACCCTTGTTGCCAAGGTAGAGGTTCTTGAAGTTGTAGGAAAATTAGATGTATCAAAGA 457
Query 434 AATCTTCATCAGTAGTGGAAACGGTAGATGTCAATGGCTTTCAAGTTCTTCCTTCACAGG 493
|||||||| ||||| ||||||| ||||||||||||| |||||||||||||| ||| |
Sbjct 458 AATCTTCACCAGTAATGGAAACCATAGATGTCAATGGGTTTCAAGTTCTTCC-TCA-A-A 514
Query 494 TAGAATCAGTGAAGCTTTTGTTTG-AAAGTCACCAAGATTTTGCATCAAAATTTCGTCTA 552
||||||| ||||| | |||||||| ||| |||| |||| ||||||| |||||||||| |
Sbjct 515 TAGAATCGGTGAATCGTTTGTTTGCAAA-ACACCTAGATATTGCATCCAAATTTCGTCCA 573
Query 553 AATAATCCATATATGAAGACGGCATACATGAATGTTCTCTTGAGCTTAACCCAA-ACGCT 611
|| || ||||||||||||||||| ||||||||||||||| | ||||||| |||| |||||
Sbjct 574 AAGAAACCATATATGAAGACGGCGTACATGAATGTTCTCCTAAGCTTAA-CCAAGACGCT 632
Query 612 ATGCCGATCGCCTCAAGAACTCTCCAATGATGGTCTCTTTGATGCGGGCGCTGCACTGTC 671
|||| |||||||||||| ||||||||||||| | | | || ||| |||||||||||| |
Sbjct 633 GTGCCAATCGCCTCAAGATCTCTCCAATGATGATATATCTGGTGCAGGCGCTGCACTGAC 692
Query 672 ATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGagaagaaacttggtga-agtaa 730
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 693 ATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACATGGTGAGA-TAA 751
Query 731 aggaaaagaagaagaaagaagaGGCTTGTTTGGCCCGGCTTCACGAAATGGACGAAA 787
|||||||||||||||| |||||||||| |||| ||||| || |||||||| ||||
Sbjct 752 AGGAAAAGAAGAAGAAGGAAGAGGCTTCTTTGAAACGGCTGCAAGAAATGGA-GAAA 807
> AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243191-11244392
REVERSE LENGTH=807
Length=807
Score = 172 bits (93), Expect = 4e-42
Identities = 501/688 (73%), Gaps = 67/688 (10%)
Strand=Plus/Plus
Query 70 ATTTATTCTGATAAATTCGTTGTCGATGGCTGCAAATGGCATCTTCG-GTTCTATCCCAA 128
||| ||||||||| ||||| || | || || ||||||||||||| | | |||||||||
Sbjct 70 ATTGATTCTGATATTTTCGTAGTTGGTGACTCCAAATGGCATCTT-GTGGCCTATCCCAA 128
Query 129 GGGATATAAT--AAG-GCTAAT---TGTTTGTCTCTGTATCT-ACATGTTCCGGATATT- 180
|||| || | ||| ||||| |||||||| |||||||| | ||||| ||||| ||
Sbjct 129 GGGAAATGGTGAAAGTACTAATAAATGTTTGTCACTGTATCTGA-ATGTTGCGGAT-TTC 186
Query 181 GAATCTTTGCCTATTGGATGGAGAATACACGCT-AAATTTTCTC-TAACAT-TAGTAAAT 237
|||||||||||| ||| |||| || |||| | ||| | || | |||| | | || |||
Sbjct 187 CAATCTTTGCCTAATGGTTGGAAAAGACAC-ATCAAA-TATCGCTTAAC-TGTTGTTAAT 243
Query 238 CAATAT-TCAGGA-AAACTCTCCAAAATAAGAGAG-ACT-C-AGCACTGGTTTGATCAGA 292
||| || || ||| ||||| ||| || | || || | | | || ||||||| || | |
Sbjct 244 CAA-ATGTC-GGAGAAACTTTCC-GAACAGGA-AGTAATACAAG-GCTGGTTTTATAAAA 298
Query 293 AGGCTCCTAACTGGGGGTTT-CAAGA-AATGATTACCCTCACTGAACTTCATG-C-CAAA 348
| || || || ||||| ||| | |||| || |||| | |||||| || | |||
Sbjct 299 ACTTTCATATCT-CTGGTTTCCAA-ACAATGCTTCCCCTTTCCAAACTTCTTGACAAAAA 356
Query 349 --GCGGGATTGGTGGTGAATGGAGAACTCACA-ATTGTTGCCAAGATAGATGTTCTTGAA 405
| ||| || |||||||||| || ||| | ||||||| | || ||| ||||||||||
Sbjct 357 TGGTGGG-TTTCTGGTGAATGGTGATGTCA-AGATTGTTGTCGAGGTAGGTGTTCTTGAA 414
Query 406 GTTGTAGGAAAATTAGATG-GCTCAGAGGAATCTTCATCAG-T-AGTGGAAACG-GTAGA 461
|| || || |||| ||||| | | ||||||| ||| || || | | | |||| | | ||
Sbjct 415 GTCGTTGGCAAATCAGATGTG-TTAGAGGAAACTTTATTAGTTCA-T-GAAA-GCATCGA 470
Query 462 TGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTAGAATCAGTGAAGCTTT-TGTTTGA-A 519
| ||||||| ||||||||||||||||||||||||||||| ||||| | | | ||||| |
Sbjct 471 TATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAA-CAATCTCTTTGAGA 529
Query 520 AGTCACCAAGATTTTGCATCAAAATTTCGT-CTAAATAATCCA-TATATGAAGA-CGGCA 576
|| |||| ||| | | |||| |||||||| | || || ||| | ||||| || | ||
Sbjct 530 AG-CACCCAGACATCGTATCAGAATTTCGTTCCAAG-AACCCACT-TATGA-GAACAACA 585
Query 577 TACATGAATGTTCT-CT-TGAGCTTAACCCAAA-CGCTATGCCGA-TCGC-CTCAAGAAC 631
||| |||||| || || || || || | | | || ||| || || | || | ||||
Sbjct 586 TACTTGAATGACCTACTATGT--TTGACTGAGATC-CTGTGC-GAGTC-CTCTGAGGAAC 640
Query 632 TCTCCAATGATGGTCTCTTTGATGCGGGCGCTGCACTGTCATATTTGAGAGAAGCAGGGT 691
|||||| || || | | | | ||| || |||| | | ||||| | |||| ||||
Sbjct 641 TCTCCACTGGTGATATGGCTAACGCGTATTCTACACTAACTTGTTTGAAAAAAGCGGGGT 700
Query 692 TTAAGTTGGATTGGTTGGagaagaaact 719
|||||||||||||| |||||||||||||
Sbjct 701 TTAAGTTGGATTGGCTGGAGAAGAAACT 728
> AT1G31370.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr1:11238298-11239363 REVERSE LENGTH=582
Length=582
Score = 172 bits (93), Expect = 4e-42
Identities = 183/225 (81%), Gaps = 11/225 (5%)
Strand=Plus/Plus
Query 349 GCGGGATTGGTGGTGAATGGAGAACTCACA-ATTGTTGCCAAGATAGATGTTCTTGAAGT 407
||||| || |||||||||||||| ||| | ||||||||| || | | ||||||||||||
Sbjct 221 GCGGG-TTTATGGTGAATGGAGAAGTCA-AGATTGTTGCCGAGGTTGGTGTTCTTGAAGT 278
Query 408 TGTAGGAAAATTAGATG-GCTCAGAGGAATCTTCATCAGTAG-TGGAAACG-GTAGATGT 464
||| | |||| ||||| | | || |||| |||||| ||| | |||||| | | |||||
Sbjct 279 TGTTCGCAAATCAGATGTG-TTAGTGGAAACTTCATTAGT-GATGGAAA-GCATCGATGT 335
Query 465 CAATGGCTTTCAAGTTCTTCCTTCACAGGTAGAATCAGTGAAGCTTTTGTTTGAAA-GTC 523
|||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| | |
Sbjct 336 CAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGAGTTTGTTTGAAAAG-C 394
Query 524 ACCAAGATTTTGCATCAAAATTTCGTCTAAATAATCCATATATGA 568
||| ||| ||||||| ||||| |||| ||| || ||| || |||
Sbjct 395 ACCCAGACATTGCATCGAAATTCCGTCCAAAGAACCCACATCTGA 439
> AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240451-11241099
REVERSE LENGTH=528
Length=528
Score = 156 bits (84), Expect = 4e-37
Identities = 174/216 (81%), Gaps = 12/216 (6%)
Strand=Plus/Plus
Query 359 TGGTGAATGGAGAACTCACA-ATTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGGAAAA 417
|||||||||||||| ||| | |||||||| || | | ||||||||||||||| || |||
Sbjct 44 TGGTGAATGGAGAAGTCA-AGATTGTTGCTGAGGTTGGTGTTCTTGAAGTTGTTGGCAAA 102
Query 418 TTAGATG-GCTCAGAGGAATCTTCATCAGTAG-TGGAAACGGTA-G-ATGTCAATGGCTT 473
| ||||| | | ||||||| |||||| ||| | |||||| | | | |||||||||| ||
Sbjct 103 TCAGATGTG-TTAGAGGAAACTTCATTAGT-GATGGAAA--GCATGTATGTCAATGGGTT 158
Query 474 TCAAGTTCTTCCTTCACAGGTAGAATCAGTGAAGCTTTTGTTTGAAA-GTCACCAAGATT 532
|||||||||||||||||||||||||| |||||| | ||||||||| | |||| ||||
Sbjct 159 TCAAGTTCTTCCTTCACAGGTAGAATTTGTGAAGAGTCTGTTTGAAAAG-CACCCAGATA 217
Query 533 TTGCATCAAAATTTCGTCTAAATAATCCATATATGA 568
| | ||||||| | | ||| || || ||| ||||||
Sbjct 218 TCGAATCAAAACTCCATCTGAAGAACCCACATATGA 253
> AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595774-21596538
REVERSE LENGTH=660
Length=660
Score = 148 bits (80), Expect = 7e-35
Identities = 250/329 (76%), Gaps = 24/329 (7%)
Strand=Plus/Plus
Query 437 CTTCATCAGTAGTGGAAACG-GTAGATGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTA 495
||||| ||||| ||||| | | ||||||||||| ||||||||||||||||||||||||
Sbjct 200 CTTCACCAGTAAAGGAAA-GCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTA 258
Query 496 GAATCAGTGAAGCTTT-TGTTTGAAAGTCA-CCAAGATTTTGCATCAAAATTTCGTCTAA 553
||||| |||||| | | | |||||||| || ||| || |||||||||||||| |||| ||
Sbjct 259 GAATCTGTGAAG-TGTATATTTGAAAGACATCCA-GACTTTGCATCAAAATTCCGTCCAA 316
Query 554 ATAATC--CATATATGAAGACGGCATACATGAATGTTCTCTT-G-AGCTTAACCCAA-AC 608
| |||| || | ||||| | ||||||||| ||| ||| | | | || || || ||
Sbjct 317 AGAATCGGCAC-T-TGAAGTCAACATACATGACTGTCCTCCTAGGA-CT-AATT-AAGAC 371
Query 609 GCTATGCC-GATCGCCTCAAGAACTCTCCAATGATGGTCTCTTTGATGCGGGCGCTGCAC 667
| | |||| | | ||| | || ||| | | |||| ||| || || || ||||
Sbjct 372 GTTGTGCCAGTTA-CCTGAGGAGCTCACTGACGATGATCTGGACGAAGCATCCGTTGCAG 430
Query 668 TGTCATATTTGAGAGAA-GCAGGGTTTAAG-TTGGATTGGTTGGagaagaaacttg-gtg 724
||||||| || || || | || || ||| |||||||||||||||||||| |||| | |
Sbjct 431 TGTCATACGTG-GAAAATGGTGGCTT-AAGATTGGATTGGTTGGAGAAGAAGCTTGCG-G 487
Query 725 aagtaaaggaaaagaagaagaaagaagaG 753
|||| |||| |||||||||||||| ||||
Sbjct 488 AAGTTAAGGCAAAGAAGAAGAAAGTAGAG 516
> AT3G58430.1 | Symbols: | TRAF-like family protein | chr3:21613163-21616183
REVERSE LENGTH=1617
Length=1617
Score = 145 bits (78), Expect = 9e-34
Identities = 236/310 (76%), Gaps = 19/310 (6%)
Strand=Plus/Plus
Query 450 GGAAACGGTAGATGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTAGAATCA-GTGA-AG 507
||||| ||||||||||||||||||||||||||||||||||||||| |||| | |||| |
Sbjct 979 GGAAA-GGTAGATGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTGGAAT-ATGTGAGAT 1036
Query 508 CTTTTGTTTGAAAGTCACCAAGATTTTGCA-TCAAAATTTCGT-CTAAATAATCCAT-AT 564
| | |||||||| |||| || ||||| | | | || || | ||| || ||| ||
Sbjct 1037 CAATA-TTTGAAAGACACCCTGACATTGCAGT-AGAGTTCCGAGC-AAAGAA-CCAACAT 1092
Query 565 ATGAAGACGGCATACATGAATGTTCT-CTTGAGCTTAACCCAAACGCTATGCC-GATCGC 622
||| ||| ||| ||||| | |||| ||| || |||| | || || |||| | || |
Sbjct 1093 CTGAGGACATCATGCATGATTTTTCTGCTT-AGTTTAATTGAGACACTGTGCCAG-TCAC 1150
Query 623 CTCAAGAACTCTCCAATGATGGTCTCTTTG-ATGCGGGCGCTGCACTGTCATATTTGAGA 681
| |||| ||||| ||||| | ||| | || | || | | |||| || ||||| ||| |
Sbjct 1151 TTGAAGAGCTCTCAAATGAAGATCT-TGTGGAAGCAGACATTGCATTGACATATGTGAAA 1209
Query 682 GAAGCAGGGTTTAAGTTGGATTGGTTGGagaagaaacttggtg-aagtaaaggaaaagaa 740
|| ||||| |||||| ||||||||||||||||||| || || ||||||| ||||||||
Sbjct 1210 GATGCAGGATTTAAGGTGGATTGGTTGGAGAAGAAGCT-GGACCAAGTAAAAGAAAAGAA 1268
Query 741 gaagaaagaa 750
| ||||||||
Sbjct 1269 GGAGAAAGAA 1278
> AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:21604871-21606229
REVERSE LENGTH=987
Length=987
Score = 141 bits (76), Expect = 1e-32
Identities = 306/412 (74%), Gaps = 36/412 (9%)
Strand=Plus/Plus
Query 463 GTCAATGGCTTTCAAGTTCTTCCTTCACAGGTAGAATCAGTGA-AGCTTTTGTTTGAAAG 521
||||| || ||||||||||||||||||||||||||||| |||| | ||| | ||||||||
Sbjct 553 GTCAACGGATTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGA-CTTATATTTGAAAG 611
Query 522 TCACCAAGATTTTGCATCAAAATTTCGT-CTAAATAATCCA-TATATGAAGACGGCATAC 579
|||| || |||||||| |||| ||| | ||| || ||| ||| ||| || |||| |
Sbjct 612 ACACCCTGACATTGCATCAGAATTCCGTGC-AAAGAA-CCAATATCTGAGGAAAGCATGC 669
Query 580 ATGAATGTTC-T-CTTGAGC-TTAACCCAAACGCTATGCC-GATCGCCT-CAAGAACTCT 634
||| || ||| | || ||| || | ||||| |||| | || | | ||||| |||
Sbjct 670 ATGGAT-TTCCTTCTC-AGCCTTGTTG-AGACGCTGTGCCAG-TCAC-TGCAAGAGTTCT 724
Query 635 CCAATGATGGTCTCTTTG-ATGCGGGCG-CTGCACTGTCATATTTGAGAGAAGCAGGGTT 692
||||||| | ||| | || | || | | | || ||| |||| |||| ||| || |||||
Sbjct 725 CCAATGAAGATCT-TGTGGAAGCAGACATC-GCGCTGACATACTTGAAAGATGCGGGGTT 782
Query 693 TAAGTTGGATTGGTTGGagaagaaacttggtg-aagtaa-aggaaaagaagaagaaagaa 750
||| |||| ||||||||||| ||| |||| |||||| || | |||||| |||||||
Sbjct 783 CAAGGTGGACTGGTTGGAGAA-AAAGTTGGACCAAGTAAGAG-ATAAGAAGGAGAAAGA- 839
Query 751 gaGG-CTTGTTTGGCCCGGCTTCACGAAATGGACGAAAAACTTCA--GCCATTTAAG-AA 806
| || ||||||||||| ||| || |||| || |||| ||| | | ||| ||| ||
Sbjct 840 GCGGTCTTGTTTGGCCAAGCTCCAAGAAACAGAGGAAA--CTTTACTGAAATTGAAGCAA 897
Query 807 GAAGTGCTT-AGACCTTGAAGCTCTAATAGATAAGGAGAAGG-AGGAGTTGT 856
||||| | ||| || || |||||||| |||| || |||| || ||||||
Sbjct 898 -AAGTG-TACAGAGCTAGATGCTCTAATGGATACTGAAAAGGCAG-AGTTGT 946
> AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245225-11246481
REVERSE LENGTH=837
Length=837
Score = 139 bits (75), Expect = 4e-32
Identities = 520/722 (72%), Gaps = 81/722 (11%)
Strand=Plus/Plus
Query 38 TAAGAGATTCCTTTTCTTTGCAAGATGCAT-CGATTTATTCTGATAAATTCGTTGTCGAT 96
||||| ||| || ||||||||| | ||| | ||||||| ||||| || || || |
Sbjct 39 TAAGA-ATTTCTCCTCTTTGCAATCT-CATGCAATTTATTTTGATATTTTTGTAGTTG-G 95
Query 97 GG-CTGCAAATGGCATCTTC-GGTTCTATCCCAAGGGATATAAT-A-AGGC--TAAT--- 147
|| | |||||||||||||| || |||||||||||||||| | | | || ||||
Sbjct 96 GGACACCAAATGGCATCTTCTGG-CCTATCCCAAGGGATATGGTGATA-GCATTAATAAA 153
Query 148 TGTTTGTCTCTGTATCTACATGTTCCGGATATTGAAT-CTTTGCCTAT-TGGATGGAGAA 205
||||||||||||| ||| |||||| ||| || || ||||||| | ||| |||| ||
Sbjct 154 TGTTTGTCTCTGTTTCTTGGTGTTCCTGATCCTG-ATGATTTGCCT-TCTGGTTGGAAAA 211
Query 206 TACACGCTAAAT-TTTC-TCTAACAT-TAGTAAATCAATAT-TCAGGA-AAACTCTCCAA 260
|||| | || | || ||| || | | || |||||| || || ||| ||||||||| |
Sbjct 212 GACAC-AT-CATATATCGTCTTAC-TGTTGTTAATCAA-ATGTC-GGAGAAACTCTCC-A 265
Query 261 AATAAG-AG-AGACTCAGCACTGGTTTGATCAGAAGG-CTCCTAACTGGGGGTT-TCAAG 316
|| | | || || | | | | ||||| | | | ||| ||| || || |||| ||||
Sbjct 266 AACAGGAAGTAG-CACGGGGCGGGTTTTACCCG-AGGTCTCTTACCT-TCGGTTCCCAAG 322
Query 317 AAATGATTACC-CTCACTGAACTTCATGCCAAAGCGGGATTGGTGGTGAATGGAGAACTC 375
|||| || || || || |||||| ||| | ||| || |||| | ||| || ||
Sbjct 323 TAATGCTT-CCACTTACAGAACTTTATG-----GTGGG-TTTTTGGTTAGTGGCCAAGTC 375
Query 376 ACA-ATTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGGAAAATTAGATG-GCTCAGAGG 433
| | ||||||||| || | | ||||||||||||||| || || | ||||| | | |||||
Sbjct 376 A-AGATTGTTGCCGAGGTTGGTGTTCTTGAAGTTGTTGGCAAGTCAGATGTG-TTAGAGG 433
Query 434 AATCTTCATCAG-TAGTGGAAACGGT-AGATGTCAATGGCTTTCAAGTTCTTCCTTCACA 491
|| ||| | || || |||| | | | |||||||||| ||||||||||||||||||||
Sbjct 434 AAACTTTGTTAGTTAATGGAGGC-ATCA-ATGTCAATGGGTTTCAAGTTCTTCCTTCACA 491
Query 492 GGTAGAATCAGTGAAGCTTT-TGTTTGAAAGTCACCAAGATTTTGCATCAAAATTTCGTC 550
||||||||| ||||| | | | || ||| ||||| ||| |||||||||| || ||||
Sbjct 492 GGTAGAATCTGTGAA-CAATCTCTTCAAAAATCACCCAGACATTGCATCAAACTTCCGTC 550
Query 551 T--AAATA-A-TCCATATATGAAGACGGCATACATGAAT-GTTCT-CT-TGAGCTTAACC 603
| ||| | | || || || ||| | ||||| ||||| | || || || ||| ||
Sbjct 551 TGGAAA-ACACTC-ATCTAAGAA--CTACATACTTGAATAGC-CTACTATG--CTTGACT 603
Query 604 CAAACG-CTATGCC-GATCGCCTCA-AGAACTCTCCAATGATGGTCTCTTTGATGCGGGC 660
| | || |||| | || ||||| | |||||||||||| || |||| ||||| |
Sbjct 604 GAG-CTTCTGTGCCAG-TCCCCTCATA-AACTCTCCAATGTTGATCTCGCCAATGCG--C 658
Query 661 GCTGCACTGTCA-TAT-T-TGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGagaagaaa 717
||| ||| | | | | | ||| | |||| || |||||||||||||||||||| ||||||
Sbjct 659 ACTGTACTCTAACT-TGTGTGACAAAAGCCGGTTTTAAGTTGGATTGGTTGGAAAAGAAA 717
Query 718 ct 719
||
Sbjct 718 CT 719
> AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597799-21599568
REVERSE LENGTH=1236
Length=1236
Score = 115 bits (62), Expect = 7e-25
Identities = 223/298 (75%), Gaps = 22/298 (7%)
Strand=Plus/Plus
Query 460 GATGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTAGAATCAGTGAAGCTTTTGTTTGAA 519
||||||||||| ||||||||||||||||||||||||||||| ||||||| | | ||||||
Sbjct 624 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTATATTTGAA 683
Query 520 AG-TCACC-AAGATTTTGCATCAAAATTTCGTCTAAAT-AATCCATATATGAAGACGGCA 576
| | ||| || | |||||||| || | | | | ||| || |||| | ||||||| |
Sbjct 684 ATAT-ACCCAA-ACATTGCATCAGAAGTCCCT-TCAATGAAACCATGTCTGAAGACATTA 740
Query 577 TACATGAATGTTCTCTT-GAGCTTAACCCAAACGCTATGCCGA-TCGCCT-CAAGAACTC 633
||||||||||| ||| | | | ||| ||||||| |||| | | |||| | || |||
Sbjct 741 TACATGAATGTACTCCTCG-GAATAATTGAAACGCTGTGCCAACT-GCCTGCG-GAGCTC 797
Query 634 TCCAATGA-TGGTCTCTTTGATGCGGGCGCTGCACTGTCATATTTGAG--AGAAGCAGGG 690
|| || | || ||| ||| || | |||| | | |||| | | | ||| ||
Sbjct 798 TCTGAT-ACTGATCTGGATGAAGCATCCATTGCAGTTT--TATTCGTGTCACAAGGTGGC 854
Query 691 TTTAA-GTTGGATTGGTTGGagaagaaacttg-gtgaagtaaaggaaaagaagaagaa 746
||||| || |||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 855 TTTAAAGT-GGATTGGTTGGAGAAGAAGCTCAAG-GAAGTAAAGGAAAAGAAGAAGAA 910
> AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589071-21590401
REVERSE LENGTH=978
Length=978
Score = 89.8 bits (48), Expect = 4e-17
Identities = 230/315 (73%), Gaps = 24/315 (8%)
Strand=Plus/Plus
Query 460 GATGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTAGAATCAGTGA-AGCTT-TTGTTTG 517
||||| ||||| ||||||||||||||||||||||||||||| |||| | | | || |||
Sbjct 562 GATGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGA-CGTATT-TTTA 619
Query 518 AAAGTCA-CCAAGATTTTGCA-TCAAAATTTCGTCTAAATAATCCAT-ATATGAAGACGG 574
||| || ||| || ||||| | | ||| | |||| || ||| || ||| ||
Sbjct 620 AAAAACATCCA-GACATTGCAGT-AGGATTCCAAGTAAAGAA-CCAACATCTGAGGAAAA 676
Query 575 CATACATGAATGTTCTCTTG--AGCTTAACCCAAACGCTATGCCGATCGCCTCAAGAA-C 631
||| ||||||| ||| |||| | | ||| | ||| | |||| ||| | || || | |
Sbjct 677 CATTCATGAAT-TTC-CTTGTCAACGTAATTGAGACGATGTGCCAATCTC-TCCAGGAGC 733
Query 632 TCTCCAATGATGGTCTCTTTG-ATGCGGGCGCTGCACTGTCATATTTGAGAGAAGCAGGG 690
|||| ||||| | ||| | || | | | | ||| || |||| |||| ||| || |||
Sbjct 734 TCTCAAATGAAGATCT-TGTGGAAGTAGACATTGCGTTGACATACTTGAAAGATGC-GGG 791
Query 691 -TTTAAGTTGGATTGGTTGGagaagaaacttggtgaa-gt-aaaggaaaagaagaagaaa 747
|||||| |||||||||| |||||||| || || | || |||| |||||||| |||||
Sbjct 792 ATTTAAGGTGGATTGGTTAGAGAAGAAGCT-GGACCATGTGAAAG-AAAAGAAGGAGAAA 849
Query 748 gaagaGGCTTGTTTG 762
||| || || |||||
Sbjct 850 GAACAGTCTGGTTTG 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43050663979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5