BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905870

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G05430.1 | Symbols:  | Ubiquitin-specific protease family C1...   745    0.0  


> AT2G05430.1 | Symbols:  | Ubiquitin-specific protease family 
C19-related protein | chr2:1985994-1987266 FORWARD LENGTH=1192
Length=1192

 Score =  745 bits (403),  Expect = 0.0
 Identities = 476/512 (93%), Gaps = 1/512 (0%)
 Strand=Plus/Plus

Query  33   AGAGAGTAAATCGATAGTTTCTCATCCTGGTACTGCATATGATGAGGATTGGGACAATGA  92
            |||||||||||| | | ||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  475  AGAGAGTAAATCAACACTTTCTCATCATGGTACTGCATATGATGAGGATTTGGACAATGA  534

Query  93   TGAAATCGTGAGCATAAACGGGTTTTGGATTTTCCGATCACAGTTAGATCTAGCGAAACG  152
            ||||||||||| |||||| || |||||||||||||||||| |||||| ||||||||||||
Sbjct  535  TGAAATCGTGAACATAAAAGGCTTTTGGATTTTCCGATCAAAGTTAGGTCTAGCGAAACG  594

Query  153  AATCTTTGAGAAACATCCAGAGACGGCATCAAATTTTTGTCTAAAGAGTGAATTTGCCAA  212
            | ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct  595  AGTCTTTGAGAAACATCCAGAGACGACAACAAAATTTTGTCTAAAGAGTGAATTTGCCAA  654

Query  213  GGAAACATACTTGACTGCGTTACTAGATCTCATCGACATGATGAACATGTTACCTCAGCA  272
            |||||| |||||||||||  ||||||| ||||| |||||||| |||||||||||||||||
Sbjct  655  GGAAACTTACTTGACTGCCCTACTAGACCTCATTGACATGATAAACATGTTACCTCAGCA  714

Query  273  ATCACTCTTTGAAGCCGAACTAAAAGAAGCACAAAACACAATTTTGGACCTGGAAGCCGC  332
            ||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct  715  ATCTCTCTTCGAAGCCGAACTAAAAGAAGCAGAAAACACAATTTTGGACCTTGAAGCTGC  774

Query  333  CGGTTTCAAATTGGATTGGTTGAAAAGGAACCTTGAGGAGATTCGTTTTACTAAGAAGAA  392
            ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  775  CGGTTTCAAGTTGGATTGGTTGAAAAGGAAGCTTGAGGAGATTCGTGTTACTAAGAAGAA  834

Query  393  AGTGAAGGACCGCACGGCTCGGATGAGAGAACTAGACCGAAATATCCAGAAGCATTTGGA  452
            || |||| |||||||| ||||||||||||||||||||||||| || ||||||||||||||
Sbjct  835  AGCGAAGAACCGCACGACTCGGATGAGAGAACTAGACCGAAAGATTCAGAAGCATTTGGA  894

Query  453  GGAGTTGTCAGTCCTTCAAGAAGAAATGAAGAAGGAGCAGTTTGAGGCTATGTGTGACAA  512
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  895  GGAGTTGTCGGTCCTTCAAGAAGAAATGAAGAAGGAGCAGTTTGAGGCTATGTGTGACAA  954

Query  513  ACCTGAATATCATTTAGACTCACTT-GTTTGA  543
            |||||||||| |||||||||||||| ||||||
Sbjct  955  ACCTGAATATTATTTAGACTCACTTTGTTTGA  986



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5