BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905911
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05900.1 | Symbols: SDG11, SUVH10 | SET domain protein 11 | ... 1242 0.0
> AT2G05900.1 | Symbols: SDG11, SUVH10 | SET domain protein 11
| chr2:2256970-2257908 FORWARD LENGTH=939
Length=939
Score = 1242 bits (672), Expect = 0.0
Identities = 851/936 (91%), Gaps = 18/936 (2%)
Strand=Plus/Plus
Query 10 GTGGGGCTCCATGCAGCCACCGTTGACATGGAGTTTATAGGAGTTGAAGAT-AGCGGGGA 68
|||||||||||| ||| |||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 10 GTGGGGCTCCATTCAGGCACCATTGACATGGAGTTTATAGGAGTTGAAGATCA-CGGGGA 68
Query 69 CCG-GGAGGATAAACAAATCGCAGTTAGTATCATCTCTTCAGGGAAAAATGCTGATAAAA 127
|| ||||| |||||| || ||||||||| ||||||||||||||||||||||||| ||||
Sbjct 69 -CGAGGAGGGTAAACAGATTGCAGTTAGTGTCATCTCTTCAGGGAAAAATGCTGACAAAA 127
Query 128 CCGAAGATCCGGATTCCTTGATATTTACGGGGTTTGGTGGTACGGACAAGTAACAT-GAT 186
|||||||||| ||||| || |||||||| ||||||||||||||||||| ||| ||| ||
Sbjct 128 CCGAAGATCCCGATTCATTAATATTTACCGGGTTTGGTGGTACGGACATGTATCATGGA- 186
Query 187 CAACCATCTGATCAGAAACTTGAGAGGTTGAATATTCCACTAGAGGCAGCTTTTCGGAAG 246
||||||| | |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 187 CAACCATGTAATCAGAAACTTGAGAGGTTGAATATTCCACTAGAAGCCGCTTTTCGGAAG 246
Query 247 AAAAGTATTGTGAGAGTGGTTAGAGGTATGAAGGATGAGAAGAGGACACATGGTAATGTT 306
|||||||||||||||||||||||| ||||||||||||| || |||||| |||||||| ||
Sbjct 247 AAAAGTATTGTGAGAGTGGTTAGATGTATGAAGGATGAAAAAAGGACAAATGGTAATATT 306
Query 307 TACATATATGATGGAACATATATGATTACTAATATGTGGCAAGAGGAAGGTCAAAATGGG 366
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 307 TACATATATGATGGAACATATATGATTACTAATAGGTGGGAAGAGGAAGGTCAAAATGGG 366
Query 367 TTCATTGTGTTCAAATTCCAATTGGTTAGAGAACCTGATCAAAAACCCGCTTTTGGTATA 426
||||| ||||| |||||| ||||||| ||||| |||||||||||||||||||| |||||
Sbjct 367 TTCATAGTGTTTAAATTCAAATTGGTGAGAGAGCCTGATCAAAAACCCGCTTTCGGTATT 426
Query 427 TGGAAATCAG-TAAAAAATTGGAAGAATGATTTGAGTACAAGACCAGGTCTTATTCTTCA 485
|||||||| | || | ||||||| ||||| |||||||| ||||||||||||||| ||| |
Sbjct 427 TGGAAATC-GATACAGAATTGGAGGAATGGTTTGAGTATAAGACCAGGTCTTATCCTTGA 485
Query 486 AGATCTCTCTAATGGAGCTGAGAATCTAAAGGTTTGTGTGGTGAATGAAGTTGACAAGGA 545
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 486 AGATCTCTCTAATGGAGCTGAGAATCTAAAGGTTTGTTTGGTGAATGAAGTTGACAAGGA 545
Query 546 GAATGGTCCTTCTTTGTTTACTTATGTCACTTCGC-TGCACCATGAGGTAATC---AATA 601
|||||||||| | ||||||| ||||||||||| | | | ||||| |||||| ||||
Sbjct 546 GAATGGTCCTGCCTTGTTTAGGTATGTCACTTCACTTATA-CATGAAGTAATCAATAATA 604
Query 602 TTCGACCGATGGTTGATCCTTGCGCTTGTGGACGTAGATCATGTGGTCCAAAA-AGTGTC 660
||| | |||||||||||| |||||||||||||||||||||||||||| ||||| | |||
Sbjct 605 TTCCATCGATGGTTGATCGTTGCGCTTGTGGACGTAGATCATGTGGTTCAAAACA-TGTA 663
Query 661 TT-TGAGAATA--TTAGTGTTTCATCATCATTGGTGATTAGTGCAAAGAAGTCAGGAAAT 717
|| ||||| | ||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 664 TTCAGAGAAAAGCTTAGTGTGTCATCGTCATTGGTGATTAGTGCAAAGAAGTCAGGTAAT 723
Query 718 GTGGCTCGATTTATGAACCATAGTTGCTCACCCAACGTTTTTTGGCAGCCGATTTCTCGT 777
|||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||
Sbjct 724 GTGGCTCGATTTATGAACCATAGTTGCTCACCCAACGTGTTTTGGCAGTCTATTGCTCGT 783
Query 778 GAAGAAAATGGTTTATGGTGTCTTTACATTGGCTTTTTTGCAATGAAACATATTCCTCCA 837
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GAACAAAATGGTTTATGGTGTCTTTACATTGGCTTTTTTGCAATGAAACATATTCCTCCA 843
Query 838 TTAACGGAGTTGAGATATGATTATGGAAAATCTAGAGGAGGTGGGAAGAAGATGTGTCTA 897
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 844 TTAACGGAGTTGAGATATGATTATGGAAAATCTAGAGGTGGTGGGAAGAAGATGTGTCTA 903
Query 898 TGTAGATCAAAGAAATGTTGTGGTTCTTTTGGATAA 933
|||||| | ||||||||||||||||| |||||||||
Sbjct 904 TGTAGAACGAAGAAATGTTGTGGTTCATTTGGATAA 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5