BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905913
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05910.1 | Symbols: | Protein of unknown function (DUF567) ... 870 0.0
> AT2G05910.1 | Symbols: | Protein of unknown function (DUF567)
| chr2:2258293-2259391 REVERSE LENGTH=810
Length=810
Score = 870 bits (471), Expect = 0.0
Identities = 541/576 (94%), Gaps = 0/576 (0%)
Strand=Plus/Plus
Query 1 ATGAAAGCAGTGGTGAGCAAGTTGCATTGTTCCTCGATGGAGGAGGTGATGGTGGTGAGA 60
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 16 ATGAAAGCAGTGGTGAGCAAGTTGTATTGTTCCTCGATGGAGGAAGTGATGGTGGTGAGA 75
Query 61 CGGCGGCCACACGTGGTTAACGGCGGTGGCTTTGTGGTGACAGATTTCAAAGAAAATATC 120
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 76 CGACGGCCACACGTGGTTAACGGCGGTGGCTTTGTGGTGACAGATTACAAAGAAAAGATA 135
Query 121 GTTTTCAAGATCGACGGTTGTGGAGTTCTTGGCACCAAAGGAGAGTTAGTTCTCAGAGAT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 136 GTTTTCAAGATCGACGGTTGTGGAGTTCTTGGAACCAAAGGAGAGTTAGTTCTCAGAGAT 195
Query 181 GGTGATGGCAACGATTTGCTTCTCATCAACAAAAAGGGAGGAATGGTGCAGGCTTTGAGC 240
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 196 AGTGATGGCAACGATTTGCTTCTCATCCACAAAAAGGGAGGAGTGGTGCAGGCTTTGAGC 255
Query 241 ATTCATAACAAGTGGAAAGGTTATAGTTACGACTACCAAGGGAGTCCTAAACCGGTTTTC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 256 ATTCATAACAAGTGGAAAGGTTATAGTTACGACTACCAAGGAAGTCCTAAACCGGTTTTC 315
Query 301 TCATTGAGGGATCCTAAACACTCTTGCTTCTCCATAATCGGTTCAATCCGCATCTCGGTC 360
| ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 316 ACGTTGAGGGATCCCAAACACTCTTGCTTCTCCATAACCAGTTCAATCCGCATCTCGGTT 375
Query 361 CAACCGGGGAATTGCTACTTTGATGTTAAAGGATATTTCCCGGATAGGGATTGTGGCATC 420
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 376 GGACCGGGGAATTGCTACTTTGATGTTAAAGGGTATTTCCCGGATAGGGATTGTAGCATC 435
Query 421 ATTGATTCCACCGGAAATATCATTGCTCAAGTAAAAGAATGGATTGGTAGCAGAGACATA 480
||||||||| |||||| ||||||| |||||||||||||||||||| || ||||| |||
Sbjct 436 GTTGATTCCAAAGGAAATGTCATTGCACAAGTAAAAGAATGGATTGGGAGTAGAGATATA 495
Query 481 TATAAGGTGGTGATAAAACCAAGTGTAGATAAAGCTTTTGTTTTTGGAGTTATCGCGGTA 540
||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 496 TATAAGGTGGTGACAAAACCAAGTGTGGATAAAGCTTTTGTTTTTGGAGTAATCGCGGTT 555
Query 541 CTCGACTATATCTATGGTGAATCTACAAGTTGTTGA 576
|| |||||||| ||||||||||||||||||||||||
Sbjct 556 CTTGACTATATATATGGTGAATCTACAAGTTGTTGA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27679014997
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5