BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905975

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49040.1 | Symbols: SCD1 | stomatal cytokinesis defective / ...   207    2e-53
  AT5G51510.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...  78.7    2e-14


> AT1G49040.1 | Symbols: SCD1 | stomatal cytokinesis defective 
/ SCD1 protein (SCD1) | chr1:18139234-18148981 REVERSE LENGTH=3904
Length=3904

 Score =  207 bits (112),  Expect = 2e-53
 Identities = 124/130 (95%), Gaps = 0/130 (0%)
 Strand=Plus/Plus

Query  61    CTCAAAATGGATGTTGGCCGTGCTGCTTCAAGAAGCGATTTGTCGACAGTGCGGGACGCA  120
             |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  2016  CTCAAAATGGCTGTGGGCCGTGCTGCTTCAAGAAGCGATTTGTCGACAGTGCGGGATGCA  2075

Query  121   CTTGAAGTTTCTGCAGAAATGGTCAAGAAGGATGCCAATAATGTTTCAGACTATGTTCAG  180
             ||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct  2076  CTTGAAGTTTCTGCAGAAATGTTCAAGAAGGATGCCAATAATGTCTCTGACTATGTTCAG  2135

Query  181   CGTCATCTCA  190
             ||||||||||
Sbjct  2136  CGTCATCTCA  2145


> AT5G51510.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF1352 (InterPro:IPR009787); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr5:20921433-20922978 FORWARD LENGTH=752
Length=752

 Score = 78.7 bits (42),  Expect = 2e-14
 Identities = 42/42 (100%), Gaps = 0/42 (0%)
 Strand=Plus/Plus

Query  1    ATGCAGCAGAGGAAGCCGACGGCGGGTAGACCCAGTGGTACC  42
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  80   ATGCAGCAGAGGAAGCCGACGGCGGGTAGACCCAGTGGTACC  121



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9406352637


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5