BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906024
Length=228
Score E
Sequences producing significant alignments: (Bits) Value
AT2G11000.1 | Symbols: ATMAK10, MAK10 | MAK10 homologue | chr2:... 366 4e-101
> AT2G11000.1 | Symbols: ATMAK10, MAK10 | MAK10 homologue | chr2:4341123-4347856
REVERSE LENGTH=2480
Length=2480
Score = 366 bits (198), Expect = 4e-101
Identities = 219/229 (96%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 1 TATCTTCCTATGTATGAGTACTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2048 TATCTTCCTATGTATGAGTACTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTC 2107
Query 61 GGTTATGCCAATGACCCTGATAAACTGGCTGAAGTCCA-AGGATTAGAGAAAGTCGCGGA 119
||||| ||||| || |||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 2108 GGTTACGCCAACGATCCTGATAAGCTGGCTGAAGT-CACGGGATTAGAGAAAGTCGCGGA 2166
Query 120 ACGCAATATTGTTGCTGTGAACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2167 ACGCAATATTGTTGCTGTGAACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGA 2226
Query 180 GTTCACCCATCATCCTTATTTCGCCACTGCTGTTGTCCGTAGATCTTGA 228
|||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2227 GTTCACCCATCATCCTTATTTCGCTACTGCTGTTGTTCGTAGATCTTGA 2275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10254620796
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5