BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906028

Length=1128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G28923.1 | Symbols:  | Pseudogene of AT5G01080; beta-galacto...  95.3    1e-18


> AT3G28923.1 | Symbols:  | Pseudogene of AT5G01080; beta-galactosidase 
| chr3:10954202-10954708 FORWARD LENGTH=507
Length=507

 Score = 95.3 bits (51),  Expect = 1e-18
 Identities = 70/79 (89%), Gaps = 1/79 (1%)
 Strand=Plus/Plus

Query  596  AAAGTAAAAGATGGAAGAAGAACGGCATTATGATCCCGTCTCCAAGGAGAGGTGGTTACC  655
            ||| |||||| | ||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct  172  AAATTAAAAGTTTGAAGAAGAACAACATTATGATCCCGTCTCCAAGGAGAGGTGGTTACC  231

Query  656  GAAGCTTCTTCCATCTTTT  674
            ||| ||||| | | |||||
Sbjct  232  GAAACTTCTAC-ACCTTTT  249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55321000590


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5