BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906047
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36670.1 | Symbols: | transposable element gene | chr1:1386... 333 5e-91
AT4G08596.1 | Symbols: | transposable element gene | chr4:5475... 281 2e-75
AT1G36880.1 | Symbols: | pseudogene, similar to P0529E05.9, bl... 244 2e-64
> AT1G36670.1 | Symbols: | transposable element gene | chr1:13864235-13865336
REVERSE LENGTH=639
Length=639
Score = 333 bits (180), Expect = 5e-91
Identities = 231/256 (90%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 3 GGAGAGTAGTCATATAAGTGAAG-ACTTTTTAGTCGAGGAAGAAGATGACTCAATAAGTG 61
|||||||| |||||||||||||| || |||| || ||| || || ||||||||||||| |
Sbjct 21 GGAGAGTAATCATATAAGTGAAGAAC-TTTTGGTTGAGAAAAAATATGACTCAATAAGGG 79
Query 62 AAGACGAAGCTTCGGTCAATGAATTTGAAGAAGAAGATGAAATAGCCAACAACGAGGATG 121
|| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 80 AAAACGAAGCTTCGGCCAATGAATTTGAAGAAGAAGATGAAATAGCTAACAACGAGGATG 139
Query 122 ACCTTCAAACTGAAGAGGCTGCTGCTTTAGAAGCAAATAATGATAATCATAAGAAAGATG 181
|| || |||| ||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 140 ACGTTGTAACTAAAGAGGCTGCTGCTTTAGAGGCAAATAATGATAATGAGAAGAAAGATG 199
Query 182 AAATATATGTTGGTATGGAGTTCAGTTCCGATGAGATTGCACATATAACTTATAAAAAGT 241
| |||||| |||| |||||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 200 ACATATATATTGGAATGGAGTTCAGTTCTGATCAGATTGCATATATAACTTATAAAAAGT 259
Query 242 ATGGAGGCAATCATGG 257
||||||||||||||||
Sbjct 260 ATGGAGGCAATCATGG 275
> AT4G08596.1 | Symbols: | transposable element gene | chr4:5475880-5477918
REVERSE LENGTH=2039
Length=2039
Score = 281 bits (152), Expect = 2e-75
Identities = 224/257 (87%), Gaps = 12/257 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAGTAGTCATATAAGTGAAGACTTTTTAGTCGAGGAAGAAGATGACTCAATAAGT 60
|||||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 1 ATGGAGAGTAATCATATAAGTGAAGATTTTTTAGTCGAAGAAAAAGATGACTCAATAAGT 60
Query 61 GAAGACGAAGCTTCGGTCAATGAATTTGAAGAAGAAGATGAAATAGCCAACAACGAGGAT 120
||| |||||| ||||| |||||||||||||||||||||| ||||||| | | |||| |
Sbjct 61 GAAAACGAAGTTTCGGCCAATGAATTTGAAGAAGAAGATAAAATAGCTATCCACGA--A- 117
Query 121 GACCTTCAAACTGAAGAGGCTGCTGCTTTAGAAGCAAATAATGATAATCATAAGAAAGAT 180
| | |||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 118 G--------A-TGAAGAGGTTGCTGCTTTAGAAGCAAATAATGATAATGAGAAGAAAGAT 168
Query 181 GAAATATATGTTGGTATGGAGTTCAGTTCCGATGAGATTGCACATATAACTTATAAAAAG 240
|||||||| |||| ||||||| | |||| |||||||||||| |||||||||||||||||
Sbjct 169 AAAATATATATTGGAATGGAGTGCGGTTCTGATGAGATTGCATATATAACTTATAAAAAG 228
Query 241 TATGGAGGCAATCATGG 257
|||||||||||||||||
Sbjct 229 TATGGAGGCAATCATGG 245
> AT1G36880.1 | Symbols: | pseudogene, similar to P0529E05.9,
blastp match of 46% identity and 1.9e-119 P-value to GP|18461196|dbj|BAB84393.1||AP003279
P0529E05.9 {Oryza sativa (japonica
cultivar-group)} | chr1:13961890-13963772 REVERSE LENGTH=1883
Length=1883
Score = 244 bits (132), Expect = 2e-64
Identities = 185/211 (88%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 49 GACTCAATAAGTGAAGACGAAGCTTCGGTCAATGAATTTGAAGAAGAAGATGAAATAGCC 108
||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 GACTCAATAAGTGAAAACAAAGCTTCGGCCAATGAATTTGAAGAAGAAGATGAAATAGCT 60
Query 109 AACAACGAGGATGACCTTCAAACTGAAGAGGCTGCTGCTTTAGAAGCAAATAATGATAAT 168
||| |||||||||| || ||||||| ||| |||| |||| ||||||||||||||||||
Sbjct 61 AACGACGAGGATGATGTTGTAACTGAACAGGTTGCTACTTTTGAAGCAAATAATGATAAT 120
Query 169 CATAAGAAAGATGAAATATATGT-T-GGTATGGAGTTCAGTTCCGATGAGATTGCACATA 226
| ||||||||| |||||||| | | || || ||||||||||| |||||||||||| |||
Sbjct 121 GAGAAGAAAGATAAAATATATATATTGGAATAGAGTTCAGTTCTGATGAGATTGCATATA 180
Query 227 TAACTTATAAAAAGTATGGAGGCAATCATGG 257
||||||||| |||||||||||| |||| |||
Sbjct 181 TAACTTATACAAAGTATGGAGGAAATCGTGG 211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12667472748
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5