BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg906059 Length=2520 Score E Sequences producing significant alignments: (Bits) Value AT2G40360.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1317 0.0 > AT2G40360.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:16852880-16856690 REVERSE LENGTH=2560 Length=2560 Score = 1317 bits (713), Expect = 0.0 Identities = 1101/1284 (86%), Gaps = 43/1284 (3%) Strand=Plus/Plus Query 1256 CAGAGGAAGAGCAAGCCTCATGTGACTTGTTGTGTGAGGAAGATCGTCCAAAATTCATTC 1315 ||||||| ||| ||||||||| ||| ||| ||| |||||||||||||||||||||||||| Sbjct 1056 CAGAGGAGGAGAAAGCCTCATATGAGTTGATGTTTGAGGAAGATCGTCCAAAATTCATTC 1115 Query 1316 CTAAAAAGTTTACATCTCTGAGAAGCATTCCAGCATATGCGAATGCACTAAAAGAGTCTT 1375 ||| || |||||||||| |||||||||| || || |||| ||||||||| || ||||||| Sbjct 1116 CTACAAGGTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTCTT 1175 Query 1376 TTGACCGTTGTTTGGATCTATACCTATGTCCGAGAGTCCGAAAGAAGAGAATAAACATTG 1435 |||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| | Sbjct 1176 TTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAGAGAATAAACATCG 1235 Query 1436 ATCCTGAATCTTTAAAGCCTAAGCTACCTAGTAGAAAAGATCTTAGAGCTTATCC-AGAC 1494 | ||||||||||| |||||||||||||||||||| || ||||||||| ||||||| | || Sbjct 1236 ACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGATCTTAGACCTTATCCTA-AC 1294 Query 1495 TCATGTTATCTTGAATATAAAGGCCATACAGGAAAAGTTACTACCATATCCACTGATTGT 1554 || ||||||||||||||||||||||||||||| |||||| | |||||||||||| || Sbjct 1295 TCCTGTTATCTTGAATATAAAGGCCATACAGGGGCTGTTACTTCAATATCCACTGATAGT 1354 Query 1555 TATGGCCAATGGATAGCCTCAGGTTCAACAGATGGATCCGTCCGTATATGGGAAGTGGAA 1614 | |||| | |||||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct 1355 TCTGGCGAGTGGATAGCCTCAGGTTCAACTGATGGATCTGTCCGTATGTGGGAAGTGGAG 1414 Query 1615 ACTGGTAGATGTCTTAAGATCTGGCAATTTGATGAAGCCATTCA-CTGTGTGGCTTGGAA 1673 ||||||||||| |||||| ||||||| ||||| ||||| | ||| |||||||||||||| Sbjct 1415 ACTGGTAGATGCCTTAAGGTCTGGCAGTTTGACGAAGCTA-TCATGTGTGTGGCTTGGAA 1473 Query 1674 TCCTCTTTTC-GGCTTTCCGA-TTTTAGCCATTGCCATGGGACGAGATTTG-GTTATCAT 1730 |||||||| | ||| |||| | |||||||| |||||||||||||||||||| || || | Sbjct 1474 TCCTCTTTCCAGGC-TTCC-AGTTTTAGCCGTTGCCATGGGACGAGATTTGTTTTTTC-T 1530 Query 1731 TAACACTGAACTTGGTACTGATGTGGAACAGAAAAATATTGAAGAGCTGCTTCACTTAGG 1790 |||||||||||||| ||||||| ||||||| ||| || | ||||| |||||||| ||| Sbjct 1531 GAACACTGAACTTGGGACTGATGAGGAACAGGAAATTACTAAAGAGAGGCTTCACTCAGG 1590 Query 1791 AAACGTTCCAGAACCAAATGCATCTGTTGCAGCAATTGCAAGATGGCTTCCAGATGAGAA 1850 |||| | ||||||||| | ||||||||||||||||||| || ||||| || |||||| Sbjct 1591 AAACATCCCAGAACCAGACGCATCTGTTGCAGCAATTGTAACCTGGCTACCTGATGAGTT 1650 Query 1851 ATATGGAGGAATCATGATTAGACATTTTAAGAACATATCCAGTATTGACTGGCATCGTAA 1910 ||||||||| || | ||| ||||||||||||| |||||| |||||||||||||||||| Sbjct 1651 ATATGGAGGGATTAAGATAAGACATTTTAAGAGCATATCGTCTATTGACTGGCATCGTAA 1710 Query 1911 GGGAGACTATATGTCGACAGTCATGGCATCCGGCGAAACACGAGGTGTTGTAATT-CATC 1969 ||||||||| | || ||||| ||||||||||| |||||||| || || || ||| || | Sbjct 1711 AGGAGACTATCTCTCAACAGTGATGGCATCCGGGGAAACACGGGGAGTGGT-ATTGCACC 1769 Query 1970 AAATCTCGAAAA-AGCTTACACAAAAG---CCATTCAAGA-TCTGTGGACTTCCAGTGAC 2024 || | || |||| || ||||||| | ||||| |||| || ||||||||||||| | Sbjct 1770 AACTGTC-AAAACAGAAAACACAAAGGCTCCCATTTAAGATTC-GTGGACTTCCAGT--C 1825 Query 2025 TG--CTCTTTTTCATCCTAGCCTTTCATACTTCTTCATCGCGACAAGAAAGAACGTGCAT 2082 || | ||||||||||| |||||||| ||||||||| | |||||||||||| |||||| | Sbjct 1826 TGTACACTTTTTCATCCCAGCCTTTCTTACTTCTTCGTTGCGACAAGAAAGGACGTGCGT 1885 Query 2083 GTTTACAATCTGTTAAAGGTAGATGAGCCCGTAAAAAAGCTGGAAACTA-GAATGAGGGA 2141 ||||||||||| || ||| || ||| || |||||||| || || | || |||| || Sbjct 1886 GTTTACAATCTTTTGAAGCCAGGCGAGGCCACCAAAAAGCTTGAGAC-AGGATTGAGAGA 1944 Query 2142 AATCTCATCAATGGCGATTCATCCTGGTGGTGATAATCTGATAGTAGGAAACA--GA-GG 2198 |||||||||||||||||||||||||||||||||||||||||||||||||| || || || Sbjct 1945 AATCTCATCAATGGCGATTCATCCTGGTGGTGATAATCTGATAGTAGGAAGCAAAGAAGG 2004 Query 2199 GAAGATGTGTTGGTTTGACATGGATCTTTCTTCGAAGCCGTACAAGACTCTCAAGAATCA 2258 ||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct 2005 GAAGATGTGTTGGTTTGACATGGATCTATCTTCGAAACCATACAAGACTCTCAAGAATCA 2064 Query 2259 TCCTAAGGACATTACTAATGCGGC-GTTTCACCG-TGCGTATCCGTTGTTTGCTTCGTCC 2316 |||||| |||||||| |||| ||| ||| || || | | |||||||| |||||||||| | Sbjct 2065 TCCTAAAGACATTACAAATGTGGCAGTT-CATCGAT-CATATCCGTTATTTGCTTCGTGC 2122 Query 2317 TCGGAGGACTCAACAGCTTTTGTGTTCCATGGAAAGGTGTATAATGATCTGAAGGAGAAT 2376 |||||||| |||||||||| ||| |||||||||| |||||||||||||||||| ||||| Sbjct 2123 TCGGAGGATTCAACAGCTTATGTTTTCCATGGAATGGTGTATAATGATCTGAACCAGAAT 2182 Query 2377 CCTCTGATTGTGCCGTTAGAGATTCTAAGAGGCCATTCTACTTCTTCAAATGGGGGAGGT 2436 |||||||||||||| || |||||||||||||| | | | ||||||||| || |||| | Sbjct 2183 CCTCTGATTGTGCCATTGGAGATTCTAAGAGG---T-C-A-TTCTTCAAAAGGAGGAG-T 2235 Query 2437 GTCTTGGACTGCAAGTTTCATCCAAGACAACCATGGCTATTCACTGCAGGGGCTGACTC- 2495 ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 2236 --CTTGGACTGCAAGTTTCATCCGAGACAACCATGGCTATTCACTGCAGGCGCTGACTCT 2293 Query 2496 AGTTATAAAACTCTATTGCCACTA 2519 | |||| ||||||||||||||||| Sbjct 2294 A-TTATCAAACTCTATTGCCACTA 2316 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 125066188899 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5