BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906059
Length=2520
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40360.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1317 0.0
> AT2G40360.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:16852880-16856690 REVERSE LENGTH=2560
Length=2560
Score = 1317 bits (713), Expect = 0.0
Identities = 1101/1284 (86%), Gaps = 43/1284 (3%)
Strand=Plus/Plus
Query 1256 CAGAGGAAGAGCAAGCCTCATGTGACTTGTTGTGTGAGGAAGATCGTCCAAAATTCATTC 1315
||||||| ||| ||||||||| ||| ||| ||| ||||||||||||||||||||||||||
Sbjct 1056 CAGAGGAGGAGAAAGCCTCATATGAGTTGATGTTTGAGGAAGATCGTCCAAAATTCATTC 1115
Query 1316 CTAAAAAGTTTACATCTCTGAGAAGCATTCCAGCATATGCGAATGCACTAAAAGAGTCTT 1375
||| || |||||||||| |||||||||| || || |||| ||||||||| || |||||||
Sbjct 1116 CTACAAGGTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTCTT 1175
Query 1376 TTGACCGTTGTTTGGATCTATACCTATGTCCGAGAGTCCGAAAGAAGAGAATAAACATTG 1435
|||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1176 TTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAGAGAATAAACATCG 1235
Query 1436 ATCCTGAATCTTTAAAGCCTAAGCTACCTAGTAGAAAAGATCTTAGAGCTTATCC-AGAC 1494
| ||||||||||| |||||||||||||||||||| || ||||||||| ||||||| | ||
Sbjct 1236 ACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGATCTTAGACCTTATCCTA-AC 1294
Query 1495 TCATGTTATCTTGAATATAAAGGCCATACAGGAAAAGTTACTACCATATCCACTGATTGT 1554
|| ||||||||||||||||||||||||||||| |||||| | |||||||||||| ||
Sbjct 1295 TCCTGTTATCTTGAATATAAAGGCCATACAGGGGCTGTTACTTCAATATCCACTGATAGT 1354
Query 1555 TATGGCCAATGGATAGCCTCAGGTTCAACAGATGGATCCGTCCGTATATGGGAAGTGGAA 1614
| |||| | |||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 1355 TCTGGCGAGTGGATAGCCTCAGGTTCAACTGATGGATCTGTCCGTATGTGGGAAGTGGAG 1414
Query 1615 ACTGGTAGATGTCTTAAGATCTGGCAATTTGATGAAGCCATTCA-CTGTGTGGCTTGGAA 1673
||||||||||| |||||| ||||||| ||||| ||||| | ||| ||||||||||||||
Sbjct 1415 ACTGGTAGATGCCTTAAGGTCTGGCAGTTTGACGAAGCTA-TCATGTGTGTGGCTTGGAA 1473
Query 1674 TCCTCTTTTC-GGCTTTCCGA-TTTTAGCCATTGCCATGGGACGAGATTTG-GTTATCAT 1730
|||||||| | ||| |||| | |||||||| |||||||||||||||||||| || || |
Sbjct 1474 TCCTCTTTCCAGGC-TTCC-AGTTTTAGCCGTTGCCATGGGACGAGATTTGTTTTTTC-T 1530
Query 1731 TAACACTGAACTTGGTACTGATGTGGAACAGAAAAATATTGAAGAGCTGCTTCACTTAGG 1790
|||||||||||||| ||||||| ||||||| ||| || | ||||| |||||||| |||
Sbjct 1531 GAACACTGAACTTGGGACTGATGAGGAACAGGAAATTACTAAAGAGAGGCTTCACTCAGG 1590
Query 1791 AAACGTTCCAGAACCAAATGCATCTGTTGCAGCAATTGCAAGATGGCTTCCAGATGAGAA 1850
|||| | ||||||||| | ||||||||||||||||||| || ||||| || ||||||
Sbjct 1591 AAACATCCCAGAACCAGACGCATCTGTTGCAGCAATTGTAACCTGGCTACCTGATGAGTT 1650
Query 1851 ATATGGAGGAATCATGATTAGACATTTTAAGAACATATCCAGTATTGACTGGCATCGTAA 1910
||||||||| || | ||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct 1651 ATATGGAGGGATTAAGATAAGACATTTTAAGAGCATATCGTCTATTGACTGGCATCGTAA 1710
Query 1911 GGGAGACTATATGTCGACAGTCATGGCATCCGGCGAAACACGAGGTGTTGTAATT-CATC 1969
||||||||| | || ||||| ||||||||||| |||||||| || || || ||| || |
Sbjct 1711 AGGAGACTATCTCTCAACAGTGATGGCATCCGGGGAAACACGGGGAGTGGT-ATTGCACC 1769
Query 1970 AAATCTCGAAAA-AGCTTACACAAAAG---CCATTCAAGA-TCTGTGGACTTCCAGTGAC 2024
|| | || |||| || ||||||| | ||||| |||| || ||||||||||||| |
Sbjct 1770 AACTGTC-AAAACAGAAAACACAAAGGCTCCCATTTAAGATTC-GTGGACTTCCAGT--C 1825
Query 2025 TG--CTCTTTTTCATCCTAGCCTTTCATACTTCTTCATCGCGACAAGAAAGAACGTGCAT 2082
|| | ||||||||||| |||||||| ||||||||| | |||||||||||| |||||| |
Sbjct 1826 TGTACACTTTTTCATCCCAGCCTTTCTTACTTCTTCGTTGCGACAAGAAAGGACGTGCGT 1885
Query 2083 GTTTACAATCTGTTAAAGGTAGATGAGCCCGTAAAAAAGCTGGAAACTA-GAATGAGGGA 2141
||||||||||| || ||| || ||| || |||||||| || || | || |||| ||
Sbjct 1886 GTTTACAATCTTTTGAAGCCAGGCGAGGCCACCAAAAAGCTTGAGAC-AGGATTGAGAGA 1944
Query 2142 AATCTCATCAATGGCGATTCATCCTGGTGGTGATAATCTGATAGTAGGAAACA--GA-GG 2198
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1945 AATCTCATCAATGGCGATTCATCCTGGTGGTGATAATCTGATAGTAGGAAGCAAAGAAGG 2004
Query 2199 GAAGATGTGTTGGTTTGACATGGATCTTTCTTCGAAGCCGTACAAGACTCTCAAGAATCA 2258
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 2005 GAAGATGTGTTGGTTTGACATGGATCTATCTTCGAAACCATACAAGACTCTCAAGAATCA 2064
Query 2259 TCCTAAGGACATTACTAATGCGGC-GTTTCACCG-TGCGTATCCGTTGTTTGCTTCGTCC 2316
|||||| |||||||| |||| ||| ||| || || | | |||||||| |||||||||| |
Sbjct 2065 TCCTAAAGACATTACAAATGTGGCAGTT-CATCGAT-CATATCCGTTATTTGCTTCGTGC 2122
Query 2317 TCGGAGGACTCAACAGCTTTTGTGTTCCATGGAAAGGTGTATAATGATCTGAAGGAGAAT 2376
|||||||| |||||||||| ||| |||||||||| |||||||||||||||||| |||||
Sbjct 2123 TCGGAGGATTCAACAGCTTATGTTTTCCATGGAATGGTGTATAATGATCTGAACCAGAAT 2182
Query 2377 CCTCTGATTGTGCCGTTAGAGATTCTAAGAGGCCATTCTACTTCTTCAAATGGGGGAGGT 2436
|||||||||||||| || |||||||||||||| | | | ||||||||| || |||| |
Sbjct 2183 CCTCTGATTGTGCCATTGGAGATTCTAAGAGG---T-C-A-TTCTTCAAAAGGAGGAG-T 2235
Query 2437 GTCTTGGACTGCAAGTTTCATCCAAGACAACCATGGCTATTCACTGCAGGGGCTGACTC- 2495
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2236 --CTTGGACTGCAAGTTTCATCCGAGACAACCATGGCTATTCACTGCAGGCGCTGACTCT 2293
Query 2496 AGTTATAAAACTCTATTGCCACTA 2519
| |||| |||||||||||||||||
Sbjct 2294 A-TTATCAAACTCTATTGCCACTA 2316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125066188899
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5