BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906074

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G44120.2 | Symbols:  | Ribosomal protein L30/L7 family prote...   185    1e-46


> AT2G44120.2 | Symbols:  | Ribosomal protein L30/L7 family protein 
| chr2:18249042-18250708 REVERSE LENGTH=1220
Length=1220

 Score =  185 bits (100),  Expect = 1e-46
 Identities = 122/133 (92%), Gaps = 0/133 (0%)
 Strand=Plus/Plus

Query  3    GATCAAGAGGCAAGTGGAATGGACATTGGTCAACAAAGATGAAGCTGTAGCTGCTAAGAA  62
            |||||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct  351  GATCAAGAGGCAAGAGGAATGGGCATTGGCCAAGAAAGATGAAGCTGTAGCTGCTAAGAA  410

Query  63   GAAGAGTGTTGAGACCCGCAAGCTCATCTTCAAGAGAGCTGAGCAGTATGAGAGAGAGTA  122
            ||||||||||||| |||||||||| |||||||||||||||||||||||||  | ||| ||
Sbjct  411  GAAGAGTGTTGAGGCCCGCAAGCTTATCTTCAAGAGAGCTGAGCAGTATGCCAAAGAATA  470

Query  123  TGCTGAGAAGGAT  135
             ||||||||||||
Sbjct  471  CGCTGAGAAGGAT  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9953014302


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5