BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906113
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13690.1 | Symbols: | PRLI-interacting factor, putative | c... 2383 0.0
> AT2G13690.1 | Symbols: | PRLI-interacting factor, putative |
chr2:5706507-5708957 REVERSE LENGTH=1894
Length=1894
Score = 2383 bits (1290), Expect = 0.0
Identities = 1541/1657 (93%), Gaps = 38/1657 (2%)
Strand=Plus/Plus
Query 1 ATGACAATGGGCGATTCTAATCTCCGTAAACCTACCAATTTCGGCACCGGACCTCTATCA 60
|||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 63 ATGACAATGGGCGACTCTGACCTCCGTAAACCTACCAATTTCGGCACCGGACATCTATCT 122
Query 61 CGGCGACGATCATGGTGTTGCTCTTTCGCCGTACCTCCGGCGAGTCCTGATACTC-TCTC 119
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 123 CGCCGACGATCATGGTGTTGCTCTTTCGCCGTACCTCCAGCGAGTCCTGATACTCGT-TC 181
Query 120 AATTTCATCTCGTAACCACATTCCAGCTAAATCTCAGCAGCAGAGACCTAAACCGGTTCC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 182 GATTTCATCTCGTAACCACATTCCAGCTAAATCTCAGCAGCAGAGACCTAAACTGGTTCC 241
Query 180 TTGCTCACCGCAAAGCTCTAAATCTGCTTTAAACATTGTAAATCGAATCGACCCGCGTCG 239
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 242 TTGCTCACCGCAAAGCTCTAAATCTGCTTTAAACATCGTAAATCGGATCGACCCGCGTCG 301
Query 240 GATCTTATCACCGGGTCGGGTTTCACCCATAGATTCGGATCCCACCGTCACTACAATGCA 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 302 GATCTTATCACCGGGTCGGGTTTCACCCATAGATTCGGATCCGACCGTCACTACAATGCA 361
Query 300 AGAGACCGAGACTGAGACCACTCACGAAGAAGAAGATG-T--GGTTGTTGTAGATTC-AC 355
||||| | | ||||||||||| ||||||||||||| | ||||||||||||||| |
Sbjct 362 AGAGA-C----C-GAGACCACTCAGGAAGAAGAAGATGATGCGGTTGTTGTAGATTCGA- 414
Query 356 CACCAAATCTGCGTTCAGAGAGTTTTAGAGCTCCGAAGATTGAGGTTACTGTCTCAGGTT 415
|||||||||| ||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 415 CACCAAATCTTCGTTCTGAGAGTTTTAGAGCTCCGAAGATTGAGGTTAC-G-----GGTT 468
Query 416 CGGGTTCGGGTTCGAGTGAGGGTTACGATGCTAGGTTGAGTCTGAAGGGAAGAAA---TG 472
|||| | || |||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 469 CGGG-T----TT-GAGTGAGGGTTACGATGCTAGGTTGAGTTTGAAGGGAAGAAATGGTG 522
Query 473 GTGGGGTTTTGGTGTTGGAGCTTAGCTCGGAAGTTTTGGCTGCGAATTCGGATGTGTTCG 532
|||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 523 GTGGGGTTCTGGTGTTGGAGCTTAGCTTGGAGGTTTTGGCTGCGAATTCTGATGTGTTCT 582
Query 533 CGGGTTTGATTGCGGAGGACAAAAAGTG---TTCATCTTCA---TCTTTAGGATTGAAGA 586
||||||||||||||||||| || ||||| ||| |||||| ||||||||||||||||
Sbjct 583 CGGGTTTGATTGCGGAGGAGAAGAAGTGTTCTTCTTCTTCATCGTCTTTAGGATTGAAGA 642
Query 587 ACACATGCAGGATTGAAGTTTGTGATGTAGAGAATCTTGGTGTTTTTAGAGAAACTGTTG 646
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 643 ACACATGCAGGATTGAAGTATGTGATGTGGAGAATCTTGGTGTTTTTAGGGAAACTGTTG 702
Query 647 AACTTATGTTTGAGGAAAGTAATGGGATTATCAAGAAGTTTATGAAAATGGGTGTCTACA 706
| || ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||
Sbjct 703 AGCTCATGTTTGAGGAAAGTAATGTTATTATCAAGAAGTTTATGACAATGGGAGTCTACA 762
Query 707 GAGCCATTGATGTACTCGAGGTGGCGGCTGGAATCAAATTTTCAAGAGCTGTCTTGTCGT 766
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 763 GAGCCATTGATGTACTTGAGGTAGCGGCTGGAATCAAATTTTCAAGAGCTGTCTTATCGT 822
Query 767 GTCTGAAATATCTTAAAGTTGTTCCTTGGACAGAGGACGAAGAGGAAAAACTGAGAAGAC 826
|||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 823 GTCTGAAATATCTTGAAGCTGTTCCTTGGACAGAGGATGAAGAGGAAAAACTGAGGAGAC 882
Query 827 TTCTTGGAATTTATAACTTTGATGCTGCTGAAATTAGCGAAATTTTGGCAAGGTTTCATT 886
||||||||||||||| |||||||| || || | |||| |||||||||||||| ||| |||
Sbjct 883 TTCTTGGAATTTATAGCTTTGATGATGATGCAGTTAGTGAAATTTTGGCAAGATTTAATT 942
Query 887 CAAACGAGACAGAAAACTCACAAGACAGCTTATCAAAGAAACTGGTTTGGTCAATAACCT 946
|||||||||||||||||| |||||||| ||||| |||||||||||||||||||| || |
Sbjct 943 CAAACGAGACAGAAAACTTGCAAGACAGTTTATCGAAGAAACTGGTTTGGTCAATTACTT 1002
Query 947 CCTGCAGTGATCTAAATCCTAGAAACGAGCTCAAATCTTTAGTGAAGGGTCTTCTTTGCA 1006
||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1003 CCTGCAGTGATGTAAATCCTAGAAACGAGCTCAAATCTCTGGTGAAGGGTCTTCTTTGCA 1062
Query 1007 AAAGCTCAGTGTACGAGAAAGAACAGCCTGAGATCAACAAGGAAGACATATATAGAGCAG 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 AAAGCTCAGTGTACGAGAAAGAACAGCCTGAGATCAACAAGGAAGACATATATAGAGCAG 1122
Query 1067 GCAAGTGTTGTGTGGATTCATTAGCTAAGTTGTTTGAAGAGGGCAGTAGTAGTTGTAGTA 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1123 GCAAGTGTTGTGTGGATTCATTAGCTAAGTTGTTTGAAGAGGGCAGTAGTAGTAGTAGTA 1182
Query 1127 GCAAGAAAGAAAAGCCATTGATTGAAAGTATTTCAAGGGAGGTTGAGAACATAAACTGGC 1186
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1183 GCAAGAAAGAAAAGCCATTGATTGAAAGTATTTCGAGGGAGGTTGAGAACATAAACTGGC 1242
Query 1187 TGTTGGAAATCATGATAGATTGGGAAATAGCAGAGGAATTTGTGGAGATATGGGGAAAGC 1246
|| |||| |||||||||||| ||||||||||||| ||||||||||| |||||||| ||||
Sbjct 1243 TGCTGGAGATCATGATAGATCGGGAAATAGCAGAAGAATTTGTGGAAATATGGGGGAAGC 1302
Query 1247 AAAGAAGGCTAGTGGAGATGCATGAGAGGGTGTCACCAATGGTGAGGTATGAAGTAAGCA 1306
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1303 AAAGAAGGCTAGTGGAGATGCATGAGAGAGTGTCACCAATGGTGAGGTATGAAGTAAGCA 1362
Query 1307 GAGTAACAGGGGCAAT-TTTCATAGCAATGGGGAAAAGGAGAGTGCAATGCGGAGGAGAA 1365
|||||||||| || || ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1363 GAGTAACAGGAGCGATATTT-ATTGCAATGGGGAAAAGGAGAGTGCAATGCGGAGGAGAA 1421
Query 1366 GCAAGGGCGGGTTTAGTAGAAGCGTGGTTCAAGCCAATGTTAGTAGATTTTGGGTGGCTA 1425
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 GCAAGGGCGGGGCTAGTAGAAGCGTGGTTCAAGCCAATGTTAGTAGATTTTGGGTGGCTA 1481
Query 1426 CAAAGATGCAAGAAGGGACTAGACATGAGGGAAGTAGAGGAAGGGATGGGGCAAACGCTG 1485
|| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1482 CAGAGATGCAAGAAAGGACTAGACATGAGGGAAGTAGAAGAAGGGATGGGGCAAACGCTT 1541
Query 1486 TTAACGCTACCAGTAAA-GCAGCAGTATCAAGTGTTCATGGAATGGTTCAGGTGGTTTTC 1544
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1542 TTAACGCTACCAGTAAAAG-AGCAGTATCAAGTGTTCATGGAATGGTTCAGGTGGTTCTC 1600
Query 1545 AAAGCATGGGACTGAGTGCCCTAATCTCAGCAAGGCGTTTCAGATTTGGTGGCGTAGGTC 1604
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1601 AAAGCATGGGACTGAGTGCCCTAATCTCAGCAAGGCGTTTCAGATATGGTGGCGTAGGTC 1660
Query 1605 ATTCCTTAGAGGTGTAGAGTCATCTACTTGTAGGTAA 1641
|||||||||||||||||| ||||||||||||||||||
Sbjct 1661 ATTCCTTAGAGGTGTAGAATCATCTACTTGTAGGTAA 1697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81073880175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5