BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906128
Length=546
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17990.1 | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 |... 684 0.0
> AT5G17990.1 | Symbols: TRP1, pat1 | tryptophan biosynthesis 1
| chr5:5957213-5959905 FORWARD LENGTH=1676
Length=1676
Score = 684 bits (370), Expect = 0.0
Identities = 496/553 (90%), Gaps = 23/553 (4%)
Strand=Plus/Plus
Query 7 GATGGGTCCAGTAGTTTCGGAAAAACCAACCTGACCGGAGTTAGAATTTATCCGACATTG 66
|||| ||||||||||| ||||| || |||| |||||||||||||||||| ||||||||||
Sbjct 202 GATGCGTCCAGTAGTTGCGGAAGAAGCAACTTGACCGGAGTTAGAATTTTTCCGACATTG 261
Query 67 AGTCGGCGACGATTCTCATCGATCGGAGTTGTGTCCCCAATTCGCGGAGATGCCCAATCT 126
|||||||||||||||||||||||||||| ||| ||||||||||| || ||||| ||||||
Sbjct 262 AGTCGGCGACGATTCTCATCGATCGGAGCTGTTTCCCCAATTCGTGGGGATGCTCAATCT 321
Query 127 TCCTTTAGT--C-GCTCTTTCGTTTGCTCTCAGAATCTTGGTTTGAGCGGTGGAATCAGT 183
||||||||| | ||||||||| ||||||||||||||| |||||||||||||| |
Sbjct 322 TCCTTTAGTCGCAGCTCTTTCGCTTGCTCTCAGAATCTCGGTTTGAGCGGTGG----A-- 375
Query 184 GGTTTCAGTGCACCTGAAGCTCTGCCAAATGTTTGTGAAAATGCCA-CTCCTTCTTCCAT 242
||| |||||| |||||||||||||| || ||||| |||||| | | |||||||||||
Sbjct 376 --TTT-AGTGCAGCTGAAGCTCTGCCACCTGCTTGTGCAAATGCTAGC-CCTTCTTCCAT 431
Query 243 CAAATCTTTCAACCAGTTGATTGAGACTTTGATTGATCGTGTTGATCTATCTGAAGCTGA 302
||||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||
Sbjct 432 TAAATCTTTCAACCAGTTGATTGAAACCTTGATTGATCGGGTTGATCTATCTGAAACTGA 491
Query 303 GGCTGAATCATCTCTCGAGTTTTTGC----T---G--AACGAGGCACTAATTAGTGCCTT 353
||||||||||||||| |||||||||| | | |||||||| || || ||||||||
Sbjct 492 GGCTGAATCATCTCTTGAGTTTTTGCTGAATGAGGCAAACGAGGCGCTGATCAGTGCCTT 551
Query 354 TCTGGTTCTCCTGAGAGCTAAAGGAGAGACATACGAAGAAATTGTGGGGTTGGCTAGGGC 413
||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 552 TCTAGTTCTTCTGAGAGCTAAAGGAGAGACATACGAAGAGATTGTGGGGTTAGCTAGGGC 611
Query 414 AATGATGAAGCATGCCAGGAAAGTGGAAGGATTAGTCGATGCTATGGACATAGTTGGAAC 473
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 612 AATGATGAAGCATGCCAGGAAAGTGGAAGGATTAGTTGATGCTGTGGACATAGTTGGAAC 671
Query 474 AGGTGGTGATGGAGCAAACACAGTCAATATATCAACTGGATCTTCAATACTTGCTGCAGC 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AGGTGGTGATGGAGCAAACACAGTCAATATATCAACTGGATCTTCAATACTTGCTGCAGC 731
Query 534 TTGTGGTGCAAAA 546
|||||||||||||
Sbjct 732 TTGTGGTGCAAAA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26171990587
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5