BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg906128 Length=546 Score E Sequences producing significant alignments: (Bits) Value AT5G17990.1 | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 |... 684 0.0 > AT5G17990.1 | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 | chr5:5957213-5959905 FORWARD LENGTH=1676 Length=1676 Score = 684 bits (370), Expect = 0.0 Identities = 496/553 (90%), Gaps = 23/553 (4%) Strand=Plus/Plus Query 7 GATGGGTCCAGTAGTTTCGGAAAAACCAACCTGACCGGAGTTAGAATTTATCCGACATTG 66 |||| ||||||||||| ||||| || |||| |||||||||||||||||| |||||||||| Sbjct 202 GATGCGTCCAGTAGTTGCGGAAGAAGCAACTTGACCGGAGTTAGAATTTTTCCGACATTG 261 Query 67 AGTCGGCGACGATTCTCATCGATCGGAGTTGTGTCCCCAATTCGCGGAGATGCCCAATCT 126 |||||||||||||||||||||||||||| ||| ||||||||||| || ||||| |||||| Sbjct 262 AGTCGGCGACGATTCTCATCGATCGGAGCTGTTTCCCCAATTCGTGGGGATGCTCAATCT 321 Query 127 TCCTTTAGT--C-GCTCTTTCGTTTGCTCTCAGAATCTTGGTTTGAGCGGTGGAATCAGT 183 ||||||||| | ||||||||| ||||||||||||||| |||||||||||||| | Sbjct 322 TCCTTTAGTCGCAGCTCTTTCGCTTGCTCTCAGAATCTCGGTTTGAGCGGTGG----A-- 375 Query 184 GGTTTCAGTGCACCTGAAGCTCTGCCAAATGTTTGTGAAAATGCCA-CTCCTTCTTCCAT 242 ||| |||||| |||||||||||||| || ||||| |||||| | | ||||||||||| Sbjct 376 --TTT-AGTGCAGCTGAAGCTCTGCCACCTGCTTGTGCAAATGCTAGC-CCTTCTTCCAT 431 Query 243 CAAATCTTTCAACCAGTTGATTGAGACTTTGATTGATCGTGTTGATCTATCTGAAGCTGA 302 ||||||||||||||||||||||| || ||||||||||| ||||||||||||||| |||| Sbjct 432 TAAATCTTTCAACCAGTTGATTGAAACCTTGATTGATCGGGTTGATCTATCTGAAACTGA 491 Query 303 GGCTGAATCATCTCTCGAGTTTTTGC----T---G--AACGAGGCACTAATTAGTGCCTT 353 ||||||||||||||| |||||||||| | | |||||||| || || |||||||| Sbjct 492 GGCTGAATCATCTCTTGAGTTTTTGCTGAATGAGGCAAACGAGGCGCTGATCAGTGCCTT 551 Query 354 TCTGGTTCTCCTGAGAGCTAAAGGAGAGACATACGAAGAAATTGTGGGGTTGGCTAGGGC 413 ||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 552 TCTAGTTCTTCTGAGAGCTAAAGGAGAGACATACGAAGAGATTGTGGGGTTAGCTAGGGC 611 Query 414 AATGATGAAGCATGCCAGGAAAGTGGAAGGATTAGTCGATGCTATGGACATAGTTGGAAC 473 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 612 AATGATGAAGCATGCCAGGAAAGTGGAAGGATTAGTTGATGCTGTGGACATAGTTGGAAC 671 Query 474 AGGTGGTGATGGAGCAAACACAGTCAATATATCAACTGGATCTTCAATACTTGCTGCAGC 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 672 AGGTGGTGATGGAGCAAACACAGTCAATATATCAACTGGATCTTCAATACTTGCTGCAGC 731 Query 534 TTGTGGTGCAAAA 546 ||||||||||||| Sbjct 732 TTGTGGTGCAAAA 744 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26171990587 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5