BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906129

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25380.1 | Symbols: CYCA2;1 | cyclin a2;1 | chr5:8815230-881...  76.8    6e-14


> AT5G25380.1 | Symbols: CYCA2;1 | cyclin a2;1 | chr5:8815230-8817566 
FORWARD LENGTH=1314
Length=1314

 Score = 76.8 bits (41),  Expect = 6e-14
 Identities = 55/62 (89%), Gaps = 0/62 (0%)
 Strand=Plus/Plus

Query  87   GTTCCCACCACCAAAACGTTTCTCAGGCGATTCATTCAAGCAGCACAAGCGTCTCACAAG  146
            ||||||||||||||||||||||||||||| |||||||  || || ||||||||| | |||
Sbjct  910  GTTCCCACCACCAAAACGTTTCTCAGGCGGTTCATTCGCGCCGCTCAAGCGTCTGATAAG  969

Query  147  GT  148
            ||
Sbjct  970  GT  971



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7746408054


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5