BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906130

Length=1776
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44630.3 | Symbols:  | Disease resistance protein (TIR-NBS-L...  65.8    1e-09


> AT3G44630.3 | Symbols:  | Disease resistance protein (TIR-NBS-LRR 
class) family | chr3:16195984-16200595 FORWARD LENGTH=4031
Length=4031

 Score = 65.8 bits (35),  Expect = 1e-09
 Identities = 60/71 (85%), Gaps = 6/71 (8%)
 Strand=Plus/Plus

Query  841   ACTAGTCTC-AAGTA-TTTGATTCTATGCTCA-TGCTCCACTTTGGTGGAGCTTCCTTCT  897
             |||| |||| ||| | ||||| ||||| || | ||||| | | |||||||||||||||||
Sbjct  2692  ACTAATCTCAAAG-AGTTTGA-TCTAT-CTAACTGCTCAAATCTGGTGGAGCTTCCTTCT  2748

Query  898   TCTATTGGAAA  908
             |||||||||||
Sbjct  2749  TCTATTGGAAA  2759



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 87850953750


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5