BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906143

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G14160.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...  84.2    5e-16


> AT2G14160.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr2:5976465-5976801 REVERSE LENGTH=258
Length=258

 Score = 84.2 bits (45),  Expect = 5e-16
 Identities = 52/55 (95%), Gaps = 1/55 (2%)
 Strand=Plus/Plus

Query  156  ATATGGATTTGTTAGTTTCAAAGATGAGAAATCCATGAAGGACGCCATTAATGGG  210
            ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct  201  ATATGGATTTGTTAGTTTCAAAGATGAGAAATCAATGAAGGATGCCATTAA-GGG  254



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11461046772


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5