BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906144
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10572.1 | Symbols: | 3-phosphoinositide-dependent protein ... 1480 0.0
> AT3G10572.1 | Symbols: | 3-phosphoinositide-dependent protein
kinase-1, putative | chr3:3304268-3306504 FORWARD LENGTH=1278
Length=1278
Score = 1480 bits (801), Expect = 0.0
Identities = 949/1018 (93%), Gaps = 20/1018 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGCAACTGATATTTGGGGAGAAATCGAACGTTCTGAGAGTTACCTAGTGTGCTCT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 79 ATGGAGGCAACTGATATTTGGGGAGAAATTGAACGTTCTGAGAGTTACCTAGTGTGCTCT 138
Query 61 ATCTATGAAGAGGCAGAGTCATTATCCTCTTCTATACTTAAAAGAATATTTGGAAACATT 120
|| ||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||
Sbjct 139 ATGTATGAAGAGGCAGAGTCATTATCTTCCTCTATACTGAAAAGAATATTTGGCAACATT 198
Query 121 GATGTTTTATCTGAGGAAGC-TAT--TGGTGATCATCAATTGCGTGATATGTTGGAATCT 177
||||||||||| || ||||| | | |||||||||||||| | ||||||||||||||||
Sbjct 199 GATGTTTTATCCGACGAAGCTTCTCAAGGTGATCATCAATTTCATGATATGTTGGAATCT 258
Query 178 GCTGGTATGGTTTTAGTCCAATCCTTGCATGGAATCGGCAGGACAGTTGAGATTGTAAAT 237
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 GCTGGTATGGTCTTAGTTCAATCCTTGCATGGAATCGGCAGGACAGTTGAGATTGTAAAT 318
Query 238 GAGTTAAGAGATGTGTTTGGTGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTCACTGGA 297
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 319 GAGTTAAGAGATGTGTTTGGAGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTTACTGGA 378
Query 298 ATATGCCTTCAAATATCAAGTGGTTCCTACTCGGGTGTACGTGAGATTCTGGAAGAGTTC 357
|||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||||
Sbjct 379 GTATGCCTTCAAATATCAAATGGTTCCTATTTGGGTGTACGTGATATTCTGGAAGAGTTC 438
Query 358 TTTAGCATATGGGTTTACAAGGACAACCACTATATCCTAAATGATGCTGGAGTAAGTGCA 417
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 439 TTTAGAATATGGGTTTACAAGGACAACCACTATATCCTAAATGATGCTGGAGTAAGTACA 498
Query 418 AAAGGATTCCATGAGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTTGTGGAGCTG 477
||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 499 AAAGGATTCCATGCGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTCGTTGAGCTG 558
Query 478 TATACCTTTGGAGTTCTTGCAAAAGTTTCAAACGACATAGGCCTAGCCATTTCATGGGTT 537
||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct 559 TATACTTTTGGAGTTCTTGCAAAATTTTCAAATGACATGGGCCTAGCCATTTCATGGGTT 618
Query 538 GAGAAAGCTGCGTTACCTGAGGAAAGACGACAGGGGATTTTGAGAAGATTGCATTTGTTA 597
|| |||||||| || ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 619 GAAAAAGCTGCATTGCCTGAGGAAAGGCGACAGGGGATTTTGAGAAGATTGCATTCCTTA 678
Query 598 CTTTCTCTCAAAACAGCAAACGTTCCAGACGCTAGTTCGTTTGAGGAAAAT-CCTAAGGA 656
||||||||||||||||| | |||| | || | ||||||||| || ||| |
Sbjct 679 CTTTCTCTCAAAACAGCTA--GTTC-------T--TT--T--GAGGAAAATTCCAAAG-A 722
Query 657 TTCTTGTTATGCTGTAGTGAATAACAAGAAGTCGTTGGCTAATGAAAAGAATGATGAGAT 716
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 723 TTCTTCTTATGCTGTAGTGAATAACAAGAAGTCGTTGGGTAATGAAAAGAATGATGAGAT 782
Query 717 TGATTATGTCCTGAAACTCTCTAAACAACATGAACCTTGGTCACTTTGGTCATCCCATCC 776
||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 783 TGATTCTTTCCTGAAACTATCTAAACAGCATGAACCTTGGTCACTTTGGTCATCCCATCC 842
Query 777 TCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGTTTGCCATAAG 836
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 843 TCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGGTTGCCGTAAG 902
Query 837 CCTTGTTGGATTAATCATATGTTATGCCTTGAAGAGAAAACGAGCTGCTTTGATACGGAT 896
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 903 CCTTGTTGGATTAATCATATGTTATGCTTTGAAGAGAAAACGAGCTGCTTTGATAAGGAT 962
Query 897 CATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCATT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 963 CATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCGTT 1022
Query 957 TTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5