BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906161
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14255.1 | Symbols: | Ankyrin repeat family protein with DH... 1397 0.0
> AT2G14255.1 | Symbols: | Ankyrin repeat family protein with
DHHC zinc finger domain | chr2:6036974-6040978 FORWARD LENGTH=1697
Length=1697
Score = 1397 bits (756), Expect = 0.0
Identities = 830/867 (96%), Gaps = 0/867 (0%)
Strand=Plus/Plus
Query 1 ATGCGAACTCATAATAATAGTTTTTTGGACAAGATCTTTTGTGGAAAATTGGGAGAGACT 60
|||||||||| ||| ||||||||| ||||||||||||| ||||||||| |||||||||||
Sbjct 745 ATGCGAACTCGTAAGAATAGTTTTGTGGACAAGATCTTCTGTGGAAAACTGGGAGAGACT 804
Query 61 AGCTATGCTTCTATGTTGTTCAGCTTAATAGTCATTCTTATGGTCCTCTTCATCACATCC 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 AGCTATGCTCCTATGTTGTTCAGCTTAATAGTCATTCTTATGGTCCTCTTCATCACATCC 864
Query 121 ATTGTTTCAGCTTCTAATCTCCCAAAGATAACTGCTATGGTTGGTCTATGGGCGTGTTTC 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 865 ATTGTTTCAGCTTCTAATCTCCCAAAGATAACTGCTATGGTTGGTCTGTGGGCATGTTTC 924
Query 181 GGTCTTTCATGTGGTGTTTACGCACTGATAGCTTTCTATCGTGTTACCAGAAAAGATCCC 240
|||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||
Sbjct 925 GGTCTTTCATGTGGTGTTTACGCACTGATAACTTTCTATCGTGTTAGCAGGAAAGATCCC 984
Query 241 GGGTACGTTAAAAGAACTGGTGAAGTTAACAGCCAACACACTGCCAACGACCCTTTGATT 300
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 985 GGGTACGTTAAAAGAACCGGTGAAGCTAACAGCCAACACACTGCCAACGACCCTTTGATT 1044
Query 301 GATATCAATTTCAAAAACCCCTCATGGAAAGGAAACTGGTCCCAACTCTGCCCTACTTGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1045 GATATCAATTTCAAAAACCCCTCATGGAAAGGAAACTGGTCCCAACTCTGCCCCACTTGC 1104
Query 361 AAGATAATTAGACCGGTGCGATCTAAGCACTGTCCCACCTGTAAGCGCTGCGTTGAGCAG 420
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1105 AAGATAATTAGACCGGTGCGATCTAAGCACTGCCCCACTTGTAAGCGCTGCGTTGAACAG 1164
Query 421 TTTGACCATCACTGCCCTTGGATTTCCAACTGTGTCGGTaaaaaaaaTAAACGCGACTTT 480
||||||||||||||||| ||||||||||||||||| ||||| || ||||||||| ||||
Sbjct 1165 TTTGACCATCACTGCCCCTGGATTTCCAACTGTGTTGGTAAGAAGAATAAACGCTACTTC 1224
Query 481 TTAGTCTTTGTGATCATGGGAGCTTTAACATCATTCGTTGGTGGTACAACTGCTGTTCAA 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1225 TTAGTCTTTGTGATCATGGGAGCTTTAACATCATTCGTTGGTGGCACAACTGCTGTTCAA 1284
Query 541 AGATTATGGAGAGGTATCCCACAGATACACCACAGAGAATCATGGATTAAACATATAGTC 600
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1285 AGATTATGGAGAGGTATCCCACAGGTACACCACGGAGAATCATGGATTAAACATATAGTC 1344
Query 601 ATTGAACACCCCGATGCTGCTGTGTTTCTGTTTTTCGACTTACTCATTTTCATTGCGACA 660
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1345 ATTGAACACCCTGATGCTGCCGTGTTTCTGTTTTTCGACTTACTCATTTTCATTGCGACT 1404
Query 661 ATGACGTTGACAATCTCACAATCTTATATGATAGCTCGGAATATTACAACCAACGAATTA 720
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1405 ATGACATTGACAATCTCACAGTCTTATATGATAGCTCGGAATATTACAACCAACGAATTA 1464
Query 721 TGGAACGCAAAAAGATTCAGTTATTTGCGGGGACCTGATGGAAGATTCTACAACCCATAT 780
|||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1465 TGGAACGCGAAGAGATTCAGTTATTTGCGGGGACCTGACGGAAGATTCTACAACCCTTAT 1524
Query 781 AACCACGGCTGGCGAAGAAACTGCACCGATTTTTTGCTTCATGGCTACACCAGGGACGAC 840
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1525 AACCACGGCTTGCGAAGAAACTGCACCGATTTTTTGGTTCATGGCTACACCAGGGACGAC 1584
Query 841 GAGGTTGTCCCGTCTTCAATTCTCTGA 867
|||||||||||||||||||||||||||
Sbjct 1585 GAGGTTGTCCCGTCTTCAATTCTCTGA 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5