BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906167

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12000.1 | Symbols:  | Phosphofructokinase family protein | ...   200    3e-51


> AT1G12000.1 | Symbols:  | Phosphofructokinase family protein 
| chr1:4049896-4053835 REVERSE LENGTH=2072
Length=2072

 Score =  200 bits (108),  Expect = 3e-51
 Identities = 144/161 (89%), Gaps = 4/161 (2%)
 Strand=Plus/Plus

Query  4     ATTGCAGAACTGAATGAAATTCTGGCAAATGAGGTTGTCGATGAAAATGGGTTGTGGAAG  63
             ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1150  ATTGCTGAACTGAATGAAATTCTGGCAAATGAGGTTGTCGATGAAAATGGTTTGTGGAAG  1209

Query  64    AAGAAGATCACTGAGCAATCCCTGAAGGTGTTTGATCGTCTACCTGAAGCAATTCAGGAA  123
             |||||| |||| ||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct  1210  AAGAAGCTCACCGAGCAATCCCTGAAGCTGTTTGATCTTCTGCCTGAAGCAATTCAGGAA  1269

Query  124   CAGCTGATTGCA--ACATTAGACCAAAACAGAAATGTCCAG  162
             |||||||| ||   | |  ||||| | || |||||||||||
Sbjct  1270  CAGCTGAT-GCTTGAGAG-AGACCCACACGGAAATGTCCAG  1308



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8048216160


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5