BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906175
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46450.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 163 4e-39
AT5G46470.1 | Symbols: RPS6 | disease resistance protein (TIR-N... 135 8e-31
> AT5G46450.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18835618-18839546 FORWARD LENGTH=3372
Length=3372
Score = 163 bits (88), Expect = 4e-39
Identities = 263/343 (77%), Gaps = 29/343 (8%)
Strand=Plus/Plus
Query 37 CTCTCGGATATTCCAAGTTTGGTGGAGCTTCCATCTTCATTTCAAAATCTCTATTTA-C- 94
||||| ||||| |||||||||||||||||||| ||||||||||| |||||| | | | |
Sbjct 2335 CTCTCAGATATCCCAAGTTTGGTGGAGCTTCCTTCTTCATTTCAGAATCTCCA-TAATCT 2393
Query 95 TGAAGCATTTG-ACAATTACA-GAATGCATAAATCTTGAGTCTCTT-CCAGCCAACA-TC 150
|| |||||||| || ||| || | ||||| |||||| ||| ||||| ||| | | ||
Sbjct 2394 TG-AGCATTTGAAC-ATTGCACG-ATGCACAAATCTGGAGACTCTTCCCA--CTGGAGTC 2448
Query 151 AGCTTTGAA-TATCTT--ACTTGGCTCGACCTTAGTCGATGCTCACGGTTGAGGAGTTTT 207
| | | ||| || ||| || || || || | |||||||||||||||||||||||
Sbjct 2449 AACCTAGAATTA-CTTGAAC--AACTTGATTTTTCTGGATGCTCACGGTTGAGGAGTTTT 2505
Query 208 CCTGATATCTCAACCAACATCTCATTG-CTCGA-CATA-ACTGAAACAGGGATCGAGGAG 264
|||||||||||||||||||||| || || | | || || ||| ||||||| || |||
Sbjct 2506 CCTGATATCTCAACCAACATCTT-TTCACTAGTTC-TAGACGGAA-CAGGGATTGAAGAG 2562
Query 265 GTTCCATGGTGGATCCAAGACTTCTCTTGCCT-TCGATACTTT-TACATGAGTGGATGCA 322
||||| |||||||| | || |||| | | || || | || || ||| ||||||||
Sbjct 2563 GTTCCTTGGTGGATTGAGGATTTCTATAGGCTCTCTTTCCTGAGTA--TGATTGGATGCA 2620
Query 323 ACAATTTACAATGCATATCCGTAAACATTTGTAAACTG-AAAA 364
||||||||||| | | ||| ||||||||| ||||||| ||||
Sbjct 2621 ACAATTTACAAGGTGTGTCCCTAAACATTTCTAAACTGGAAAA 2663
> AT5G46470.1 | Symbols: RPS6 | disease resistance protein (TIR-NBS-LRR
class) family | chr5:18842701-18849741 FORWARD LENGTH=4849
Length=4849
Score = 135 bits (73), Expect = 8e-31
Identities = 302/408 (74%), Gaps = 34/408 (8%)
Strand=Plus/Plus
Query 49 CCAAGTTTGGTGG-AGCTTCCATCTTCATTTCAAAATCTCTATTTAC-TGAAGCATTT-G 105
|||||||| |||| || | || |||||| |||| ||||||||| || || ||||||| |
Sbjct 2332 CCAAGTTTTGTGGAAG-TCCCTTCTTCAATTCAGAATCTCTATCAACTTG-AGCATTTGG 2389
Query 106 ACAATTACAGAA-TGCATAAATCTTGAGTCTCTT-CCAGC-CAACATCAGCTTTGAATAT 162
| ||||| ||| |||| |||||| | | ||||| ||| | | || | | | || | |
Sbjct 2390 A-AATTA-TGAACTGCAGAAATCTGGTGACTCTTCCCA-CTGGA-ATAAACCTCGACTCT 2445
Query 163 CTTACTTGGCTCGACCT-TAGTCGA-TGCTCACGGTTGAGGAGTTTTCCTGATATCTCAA 220
|| | || || || || | || | || || | ||||| || |||||||||||||||||
Sbjct 2446 CTCATTTCACTTGATCTCT-CTC-ATTGTTCTCAGTTGAAGACTTTTCCTGATATCTCAA 2503
Query 221 CCAACATCTCAT-TGCTCGA-CATAA-CTGAAACAGGGATCGAGGAGGTTCCATGGTGGA 277
||||||||||| | ||| | | ||| || | |||| ||| || |||||||| | || ||
Sbjct 2504 CCAACATCTCAGAT-CTCAATC-TAAGCT-ACACAGCGATTGAAGAGGTTCCTTTGTCGA 2560
Query 278 TCCA-AGACT-TCTCTTGCCT-TCGATACTTTTACATGAGTGGATGCAACAATTTACAAT 334
|| | | | | ||||| ||| | | ||| | | |||| |||||||| |||||||| ||
Sbjct 2561 TCGAGAAATTATCTCT--CCTCT-GTTACCTAGATATGAATGGATGCAGCAATTTACTAT 2617
Query 335 GCATATCCGTAAACATTTGTAAACTGAAA-ATTCTTAAGATCGCTAA-TTTTGCACACTG 392
| ||||| |||||||| |||||||||| || || ||| ||| | |||| || ||||
Sbjct 2618 GTGTATCCCCAAACATTTCTAAACTGAAACAT-CTCGAGAGAGCTGACTTTT-CAGACTG 2675
Query 393 CGGGGCATTGACTGAAGCTCGGATT-AATGATAGTCCAAGTGAGGTGG 439
| || ||||||||||||| | | |||| |||| |||||||| |||
Sbjct 2676 TGTGGAATTGACTGAAGCTAGC-TGGAATGGTAGTTCAAGTGAGATGG 2722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65110106865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5