BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906176
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46470.1 | Symbols: RPS6 | disease resistance protein (TIR-N... 279 5e-74
AT4G08450.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 276 6e-73
AT5G22690.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 259 6e-68
AT5G46450.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 257 2e-67
AT1G31540.2 | Symbols: | Disease resistance protein (TIR-NBS-L... 176 6e-43
AT5G46490.2 | Symbols: | Disease resistance protein (TIR-NBS-L... 152 1e-35
> AT5G46470.1 | Symbols: RPS6 | disease resistance protein (TIR-NBS-LRR
class) family | chr5:18842701-18849741 FORWARD LENGTH=4849
Length=4849
Score = 279 bits (151), Expect = 5e-74
Identities = 332/418 (79%), Gaps = 17/418 (4%)
Strand=Plus/Plus
Query 439 GAAGTGAGGAAGGTTGGGATATGGGGTCCCTCGGGAATTGGCAAGACTACCATTGCAAGA 498
|||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 619 GAAGTGAGGATGGTCGGGATATGGGGTCCCTCGGGAATTGGCAAAACGACCATTGCAAGA 678
Query 499 GCTCTATTTAGTCGTCTCTCTCATCACTTCCAAGGTAGGGTTTTCATAGACATGCGTTT- 557
|||||||||||||| |||||| ||| || ||| |||| |||||||| |||| | ||||
Sbjct 679 GCTCTATTTAGTCGACTCTCTTGTCAGTTTCAAAGTAGTGTTTTCATTGACAAG-GTTTT 737
Query 558 CATATCTAAGAGTGTCAAAGATTATAGCAAAGGC-AACCC-GACTGACTATAACATGAAG 615
||||||||||||| | ||| ||| || || | || | | ||||||||||||||||
Sbjct 738 CATATCTAAGAGTATGGAAGTTTACAGTGGAG-CTAATCTTGT-TGACTATAACATGAAG 795
Query 616 TTGCACTTGCAAAGAAAATTTCTCTCTAAAATATTAGACAAAGAGGGTATAAAGTTAGAT 675
||||||||||||||| ||||| || |||| || |||||| ||| |||||| || ||
Sbjct 796 TTGCACTTGCAAAGAGCCTTTCTAGCTGAAATTTTTGACAAAAAGGACATAAAGATACAT 855
Query 676 CACTTAGGTGCAGTG-AAAGGGAAATTAAAACACCATAAAGTTCTTATCATTATTGATGA 734
| ||||||| || ||| | | |||| |||| |||| ||| ||| ||||||||||
Sbjct 856 G--T-AGGTGCAATGGAAAAG-ATGGTAAAGCACCGGAAAGCTCTCATCGTTATTGATGA 911
Query 735 TTTGGATGATCAAG-TGGTGTTAGATGCCTTGGCGGGTGGAGA-TGAATGGTTTGGTTCT 792
||| |||||||||| || || ||||||| || |||| | | | | |||||||||| |
Sbjct 912 TTTAGATGATCAAGATG-TGCTAGATGCTTTAGCGGATCAA-ACTCAATGGTTTGGAAGT 969
Query 793 GGCAGCAGAATCATCGCGATTACA-AAAGATAAGCATATTCTAAGGGCCCATGGGATT 849
|| || |||||||| | | ||||| ||| |||||||| || |||||||| || |||||
Sbjct 970 GGGAGTAGAATCATTGTGGTTACAGAAA-ATAAGCATTTTTTAAGGGCCAATCGGATT 1026
> AT4G08450.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr4:5365610-5371101 FORWARD LENGTH=3705
Length=3705
Score = 276 bits (149), Expect = 6e-73
Identities = 345/435 (79%), Gaps = 32/435 (7%)
Strand=Plus/Plus
Query 439 GAAGTGAGGAA-GGTTGGGATATGGGGTCCCT-CGGGAATTGGCAAGACTACCATTGCAA 496
||||||| ||| |||||||||||||||| ||| |||| ||||| ||||| ||||||||||
Sbjct 601 GAAGTGA-GAATGGTTGGGATATGGGGT-CCTACGGGGATTGGTAAGACAACCATTGCAA 658
Query 497 GAGCTCTATTTAGTCGTCTCT-CTCATCACTTCCAAGGTAGGGTTTTCATAGACATGCG- 554
||||| |||||| ||| ||| | | ||||||||||||||||||||| ||||||| | |
Sbjct 659 GAGCTTTATTTAATCGAATCTAC-CGTCACTTCCAAGGTAGGGTTTTTATAGACA-GAGC 716
Query 555 TTTCATATCTAAGAG--TGTCAAAGATTATAGCAAAGGC-AAC-CCGACTGACTATAACA 610
||| ||||||||||| || | | |||||| | | || ||| | ||| |||||||||
Sbjct 717 TTTTATATCTAAGAGTATGGC-TA-TTTATAGTAGA-GCAAACTCGGAC-GACTATAACT 772
Query 611 TGAAGTTGCACTTGCAAAGAAAA-TT-TCTCTCTAAAATATTAGAC-AAAGAGGGTATAA 667
|||||||||| |||| ||||||| || | | |||||| | |||||| ||| | | |
Sbjct 773 TGAAGTTGCATTTGC-AAGAAAAGTTGT-TGTCTAAACTTTTAGACAAAAAAAACT-TGG 829
Query 668 AGTTAGATCACTTAGGTGCAGTGAAAGGGAAATTAAAACACCAT-AAAGTTCTTATCATT 726
|| || ||||| ||| ||| ||||||| || ||| || || |||||||||||| ||
Sbjct 830 AGATAAATCACCTAGATGCTGTGAAAGAGAGGCTAAGGCA-AATGAAAGTTCTTATCTTT 888
Query 727 ATTGATGATTTGGATGATCAAGTGGTGTTAGATGCCTTGGCGGGTGGAGA-TGAATGGTT 785
||||||||||||||||||||||||||| |||| ||||| || || | | | | |||||
Sbjct 889 ATTGATGATTTGGATGATCAAGTGGTGCTAGAAGCCTTAGCCTGTCAA-ACTCAGTGGTT 947
Query 786 TGGTTC-TGGCAGCAGAATCATCGCGATTACAAAAGATAAGCATATTCT-AAGGGCCCAT 843
||| | ||| || |||||||| | ||||||||||||||||||| | || |||||| ||
Sbjct 948 TGGG-CATGGAAGTAGAATCATTGTGATTACAAAAGATAAGCATCT-CTTAAGGGCTTAT 1005
Query 844 GGGATT-A-CATATA 856
|||||| | ||||||
Sbjct 1006 GGGATTGATCATATA 1020
> AT5G22690.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:7541271-7545182 FORWARD LENGTH=3419
Length=3419
Score = 259 bits (140), Expect = 6e-68
Identities = 328/418 (78%), Gaps = 16/418 (4%)
Strand=Plus/Plus
Query 440 AAGTGAGGAAGGTTGGGATATGGGGTCCCTCGGGAATTGGCAAGACTACCATTGCAAGAG 499
||||||||| | ||||||| ||||| || || || ||||| |||||||||||||| ||||
Sbjct 709 AAGTGAGGATGTTTGGGATTTGGGGACCTTCTGGTATTGGAAAGACTACCATTGCTAGAG 768
Query 500 CTCTATTTAGTCGTCTCTCTCATCACTTCCAAGGTAGGGTTTTCATAGACATGCG-TTTC 558
|||| |||||||| |||||| ||| ||||||||||| |||||| |||||| | | ||||
Sbjct 769 CTCTGTTTAGTCGAATCTCTCGTCATTTCCAAGGTAGCGTTTTCTTAGACA-GAGCTTTC 827
Query 559 ATATCTAAGAGTGT-CAAAGATTATAGCAAAGGCAAC-CCGACTGACTATAACATGAAGT 616
| ||||||||| | ||| |||||| ||||||| ||| |||| ||| |||
Sbjct 828 GTGTCTAAGAGTATGGAAA-TTTATAGTGGAGGCAACGTGGAC-AACTACAACGCCAAGC 885
Query 617 TGCACTTGCAAAGAAAATTTCTCTCTAAAATATT-AGA-CAAAGAGGGTATAAAGTTAGA 674
|||| |||||| |||| ||| | ||| |||| || ||| |||| | | |||||| ||
Sbjct 886 TGCATTTGCAAGGAAAGTTTTTGTCTGAAATTTTAAGAGCAAA-A-GACATAAAGATATC 943
Query 675 TCACTTAGGTGCAGTGAAAGGGAAATTAAAACACCAT-AAAGTTCTT-ATCATTATTGAT 732
| | ||||||| ||| || || |||| || || |||||| || ||| ||||||||
Sbjct 944 TAATTTAGGTGTTGTGGGAGAGAGGCTAAAGCA-TATGAAAGTT-TTAATCTTTATTGAT 1001
Query 733 GATTTGGATGATCAAGTGGTGTTAGATGCCTTGGCGGGTGGAGATGAATGGTTTGGTTCT 792
||||||||||||||||||||||||||||| |||||| || | | | |||||||||| |
Sbjct 1002 GATTTGGATGATCAAGTGGTGTTAGATGCTTTGGCGAGTAAACCTCATTGGTTTGGTTGT 1061
Query 793 GGCAGCAGAATCATCGCGATTACAAAAGATAAGCA-TATTCTAAGGGCCCATGGGATT 849
|| ||||||||||| | ||||||||||||||||| | || || |||| |||||||||
Sbjct 1062 GGGAGCAGAATCATTGTTATTACAAAAGATAAGCAATTTTTTA-GGGCTCATGGGATT 1118
> AT5G46450.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18835618-18839546 FORWARD LENGTH=3372
Length=3372
Score = 257 bits (139), Expect = 2e-67
Identities = 333/422 (79%), Gaps = 31/422 (7%)
Strand=Plus/Plus
Query 439 GAAGTGAGGAAGGTTGGGATATGGGGTCCCTCGGGAATTGGCAAGACTACCATTGCAAGA 498
|||||||||| |||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct 616 GAAGTGAGGATGGTTGGGATATGGGGTACCTCGGGAATCGGTAAGACTACCATTGCAAGA 675
Query 499 GCTCTATTTAGTCGTCTCTCTCA-TCACTTCCAAGGTAGGGTTTTCATAGACATGCG-TT 556
||| |||||||| ||||||| | ||| || ||| |||| |||| |||||||| | | ||
Sbjct 676 GCTTTATTTAGTAATCTCTCT-AGTCAGTTTCAAAGTAGTGTTTACATAGACA-GGGCTT 733
Query 557 TCATATCTAAGAGTGTCAAAGATTATAG-CAAAGGCAA-CCCGACTGACTATAACATGAA 614
|||||||||||||| | ||| ||| | | || ||| || || |||||||||||||||
Sbjct 734 TCATATCTAAGAGTATGGAAGGTTACGGTC-GAGCCAATCCAGA-TGACTATAACATGAA 791
Query 615 GTTGCACTTGCAAAGAAAATTT-CTCTCTAAAATATTAGACAAAGAGGGTATA-AAGTTA 672
||||| |||| ||||||||| || | | |||| || | |||| | | | | | | |
Sbjct 792 GTTGCGTTTGC-GAGAAAATTTCCTGTTTGAAATTTTGGGCAAA-A-AG-A-ACATG-AA 845
Query 673 GATCACTTAGGTGCAGTGAAAGGGAAA--TTAAAACACCATAAAGTTCTTATCATTATTG 730
||| | |||||| || || |||| | || || || |||||||||||||||||||
Sbjct 846 GAT--C---GGTGCAATGGAA--GAAAGGCTGAAGCATCAAAAAGTTCTTATCATTATTG 898
Query 731 ATGATTTGGATGATCAAG-TGGTGTTAGATGCCTTGGCGGGTGGAGA-TGAATGGTTTGG 788
|||||||||||||||||| || || |||||||||| | |||| || | | ||||||||||
Sbjct 899 ATGATTTGGATGATCAAGATG-TGCTAGATGCCTTAGTGGGTAGA-ACTCAATGGTTTGG 956
Query 789 TTCTGGCAGCAGAATCATCGCGATTACAAAAGATAAGCATATTCT-AAGGGCCCATGGGA 847
||| || ||||| || | | |||||||| | || ||| |||| ||||||||||||||
Sbjct 957 AAGTGGGAGTAGAATAATTGTGGTTACAAAAAACAAACAT-TTCTTAAGGGCCCATGGGA 1015
Query 848 TT 849
||
Sbjct 1016 TT 1017
> AT1G31540.2 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:11288452-11293753 REVERSE LENGTH=4239
Length=4239
Score = 176 bits (95), Expect = 6e-43
Identities = 303/401 (76%), Gaps = 24/401 (6%)
Strand=Plus/Plus
Query 439 GAAGTGAGGAA-GGTTGGGATATGGGGTCCCTC-GGGAATTGGCAAGACTACCATTGCAA 496
||||||| ||| |||||| |||| |||| |||| ||| ||||| ||||||||||||||||
Sbjct 663 GAAGTGA-GAATGGTTGGTATATCGGGTTCCTCAGGG-ATTGGTAAGACTACCATTGCAA 720
Query 497 GAGCTCTATTTAGTCGTCTCTCTC-ATCACTTCCAAGGTAGGGTTTTCATAGACATGCG- 554
||||||| |||| || || |||| | || ||||||||||| |||||| |||| | |
Sbjct 721 GAGCTCTGTTTAAACGACTTTCTCGA-CATTTCCAAGGTAGCACTTTCATCGACA-GGGC 778
Query 555 TTTCATATCTAAGAGTGTC-AAAGA-TTATAGCAAAGGCAA-CCCGACTGACTATAACAT 611
||| ||||| | | ||| || | |||||| | ||| || ||| ||| || ||
Sbjct 779 TTTTGTATCTTATA--GTCGGAATATTTATAGTGGCGCCAATCCGGAC-GACCCCAATAT 835
Query 612 GAAGTTGCA-CTTGCAAAGAAAATTTCTCTCTAAAATAT-TAGACAAAGAGGGTATAAAG 669
||||||||| | | ||| || | || || ||| |||| | | | ||| | | ||||||
Sbjct 836 GAAGTTGCAGC-TACAAGGACACTTCCTATCTGAAAT-TCTCGGGAAAAAAGACATAAAG 893
Query 670 TTAGATCACT-TAGGTGCAGTGAAAGGGAAATTAAAACACCATAAAGTTCTTATCATTAT 728
||||| | | || |||| || ||| || |||| ||||| |||||||||||||||||
Sbjct 894 ATAGATGA-TCCAGCTGCATTGGAAGAGAGGCTAAAGCACCAAAAAGTTCTTATCATTAT 952
Query 729 TGATGATTTGGATGATC-AAGTGGTGTTAGATGCCTTGGCGGGTGGAGA-TGAATGGTTT 786
|||||||||||||||| || |||| ||||| | || | |||| | | | ||||||||
Sbjct 953 TGATGATTTGGATGATATAA-TGGTACTAGATACATTAGTGGGTCAA-ACTCAATGGTTT 1010
Query 787 GGTTCTGGCAGCAGAATCATCGCGATTACAAAAGATAAGCA 827
|| | ||| ||||||||||| | | ||||||| ||||||||
Sbjct 1011 GGATATGGGAGCAGAATCATTGTGGTTACAAATGATAAGCA 1051
> AT5G46490.2 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18850776-18853843 FORWARD LENGTH=2649
Length=2649
Score = 152 bits (82), Expect = 1e-35
Identities = 321/433 (74%), Gaps = 30/433 (7%)
Strand=Plus/Plus
Query 439 GAAGTGAGGAAGGTTGGGATATGGGGTCCCTCGGGAATTGGCAAGACTACCATTGCAAGA 498
||||||| || |||||| ||||||||| ||||||| ||||| ||||||||||||||| ||
Sbjct 676 GAAGTGAAGATGGTTGGTATATGGGGTTCCTCGGGGATTGGTAAGACTACCATTGCACGA 735
Query 499 GCTCTATTTAGTC-GTCTCTCTCATCACTTCCAAGGTAGGGTTTTCATAGAC--ATGCGT 555
||| | |||| | || | || || ||||||| |||| ||||||||| || | |
Sbjct 736 GCTTTGTTTA-ACAACCTTTTTCGGCATTTCCAAGTTAGGAAATTCATAGACAGAT-CTT 793
Query 556 TT-CATATCTAAGAGTGTCA-AAGATT-ATAGCAAAGGCAA-CCCGACTGACTATAACAT 611
|| | || ||||||| | || ||| |||| | | ||| || ||| ||| | || ||
Sbjct 794 TTGCCTA--TAAGAGT-AGAGAA-ATTCATAGTAGTGCCAATCCTGAC-GACCACAATAT 848
Query 612 GAAGTTGCACTTGCAAAGA-AAATTTCTCTCTAAAATAT-TAGACAAAG-AGGGTATAAA 668
|||||| || || | |||| | || |||||| |||| | || | | | | |||||
Sbjct 849 GAAGTTACATTTAC-AAGAGAGCTTCCTCTCTGAAAT-TCTA-AGGATGCCGAACATAAA 905
Query 669 GTTAGATCACT-TAGGTGCAGTGAAAGGGAAATTAAAACACCATAAAGTTCTTATCATTA 727
| ||||| | | | |||| || ||| || |||| |||| ||||||||||||||||
Sbjct 906 GATAGATGA-TCCAACTGCACTGGAAGAGAGGCTAAAGTACCAAAAAGTTCTTATCATTA 964
Query 728 TTGATGATTTGGATGATC-AAGTGGTGTTAGATGCCTTGGCGGGTGGAGA-TGAATGGTT 785
||||||||||||||||| || |||| ||||| | |||| |||| | | | |||||||
Sbjct 965 TTGATGATTTGGATGATATAA-TGGTACTAGATACATTGGTGGGTCAA-ACTCAATGGTT 1022
Query 786 TGGTTCTGGCAGCAGAATCATCGCGATTACAAAAGATAAGCATATTCTA-AGGGCCCATG 844
||| | ||| ||||||||||| | | ||||||| |||||||| |||| | || ||||
Sbjct 1023 TGGATATGGGAGCAGAATCATTGTGGTTACAAATGATAAGCAC-TTCTTGACTGCTCATG 1081
Query 845 GGATT-A-CATAT 855
||||| | |||||
Sbjct 1082 GGATTGATCATAT 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88754563560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5