BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg906179 Length=1098 Score E Sequences producing significant alignments: (Bits) Value AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motif... 1131 0.0 AT2G14550.1 | Symbols: | pseudogene, putative pre-mRNA splicin... 333 2e-90 > AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:8031182-8033619 REVERSE LENGTH=1566 Length=1566 Score = 1131 bits (612), Expect = 0.0 Identities = 962/1123 (86%), Gaps = 56/1123 (5%) Strand=Plus/Plus Query 1 ATGTCGACTCGAATAACTCCTGGTGTAGGAGCTAATCTTCTCGGCCAACACGCCACTGAA 60 ||| |||||||||| |||||||||| |||||||||||||||||||||||| || |||| Sbjct 103 ATGACGACTCGAATCGCTCCTGGTGTTGGAGCTAATCTTCTCGGCCAACACTCCGCTGAG 162 Query 61 AGGAACCAAGACGCCACCATCTACGTCGGAAATCTCAG-TCCTCAGCTTTCTGAAGATTT 119 ||||||||||||||||| | |||||||| |||| | | |||||||||||||||| || Sbjct 163 AGGAACCAAGACGCCACTGTTTACGTCGGTGGTCTC-GATGCTCAGCTTTCTGAAGAATT 221 Query 120 GCTTTTGGAATTGTTCGTACAAGCCGGACCAGTTGTTAGCGTCTTTATTCCAAAAGATAA 179 ||||| |||||||||||| ||||| ||||| ||||||| |||| | | || |||||| | Sbjct 222 GCTTTGGGAATTGTTCGTTCAAGCTGGACCTGTTGTTAATGTCTATGTACCGAAAGAT-A 280 Query 180 G-GTGACAAATCTTCAACA-AACATTTGGATTCGTTCAAT-TCCGTAATGAGGAAGATGC 236 | |||||||||||||| || ||| | ||||||| || ||| | |||| |||||||||||| Sbjct 281 GAGTGACAAATCTTCATCAGAAC-TATGGATTCATTGAATAT-CGTAGTGAGGAAGATGC 338 Query 237 TGACTATGCAATTAAGGTT-TATAACATGATTAAGCTCTATGGGGAGCCTATACGTGTTA 295 ||| ||||| ||||||||| | |||||||||||||||| | ||| ||||||||||||||| Sbjct 339 TGATTATGCGATTAAGGTTCT-TAACATGATTAAGCTCCACGGGAAGCCTATACGTGTTA 397 Query 296 AAAAGGCATCTCAAGATAAGAAGAGCTTGGATGTTGGTGCTAACCTTTTTATTGGAAACC 355 | |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 398 ACAAGGCATCTCAAGATAAGAAGAGCCTGGATGTTGGTGCTAACCTTTTCATTGGAAACC 457 Query 356 TTGATCCTGATGTGGATGAAAAGATGTTGTATGATACTTTTAGCGCGTTTGGTATGGTTG 415 |||| |||||||||||||| ||| | |||||||||||||| || || |||||| || ||| Sbjct 458 TTGACCCTGATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTG 517 Query 416 CTGATCATCCTAAGATAATGCGAGATCCCGATACTGGAAACCCACGAGGTTTCGGTTTCA 475 || | |||||||||||||| |||||||||||||||||||| |||||||||| ||||||| Sbjct 518 CTTCTAATCCTAAGATAATGAGAGATCCCGATACTGGAAACTCACGAGGTTTTGGTTTCA 577 Query 476 TTAGCTATGACTCTTTTGAGGCATCTGATGCTGCTATTGAGGCAATGACTGGACAATATC 535 | ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 578 TCAGCTATGACTCCTTTGAAGCATCTGATGCTGCTATTGAGTCAATGACTGGACAATATC 637 Query 536 TGAGTAGTCGTCAAATAACAGTCTCTTATGCATACAAGAAAGACACCAAAGGAGAGCGAC 595 | |||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| | Sbjct 638 TCAGTAATCGTCAAATCACAGTCTCTTACGCATACAAGAAAGACACCAAAGGAGAGCGCC 697 Query 596 ACGGTACTCAAGCAGAGAGGCTTTTGGCTGCTACAAATCCAAGTTCCCA-AAGAAGCAGA 654 | ||||||| |||||||||||||||||| || |||||||||| | |||| || ||||||| Sbjct 698 ATGGTACTCCAGCAGAGAGGCTTTTGGCAGCCACAAATCCAACTGCCCAGAA-AAGCAGA 756 Query 655 CCCCATACGCTATTCGCAAGTGGCCCCTCTA-CGCAGATTAATGCTCCTAAAGTTAACGG 713 ||||||||||||||||||| ||| ||||| | | ||| | |||||| ||||||| || Sbjct 757 CCCCATACGCTATTCGCAA-TGGGCCCTCCATC-CAG-T----GCTCCTCAAGTTAATGG 809 Query 714 TCTACCACGTCCGTTCGCTAATGG-AGGTATGCAGCCTGTCCCGAT-CCCGGCTCCACAT 771 ||||||||||||||| ||||| || || ||||| ||||||||||| |||| |||| | | Sbjct 810 TCTACCACGTCCGTTTGCTAACGGCAGC-ATGCAACCTGTCCCGATTCCCG-CTCCCCGT 867 Query 772 CCACCACCACCACC------ACAAGTGTATCAAACTCAGCCACCATCTTGGCCTTCTCAG 825 | |||||||||||| |||||| |||||||||||||||||||| ||||| |||||| Sbjct 868 CAACCACCACCACCTCCTCCACAAGTATATCAAACTCAGCCACCATCCTGGCCATCTCAG 927 Query 826 CCACAACAACACGGCTTAGTGGTTCCACCACCGCCCATGCAATTCCGTCCGCCTCAAGGT 885 |||||||||||| || | |||| |||||||| | |||||||||||||| ||||| ||| Sbjct 928 CCACAACAACACAGC--A-TGGTCCCACCACC-C--ATGCAATTCCGTCCACCTCAGGGT 981 Query 886 CTGCAGCCGCAACCACCACCTCCTCAGTTTCATCA-TCACCAACAAGGTTTCGGTGTTCC 944 ||| |||| | ||||||||||||||||| | | |||||||||||||||||||| ||| Sbjct 982 ATGCCTCCGC--C-ACCACCTCCTCAGTTTC-TAAATCACCAACAAGGTTTCGGTGGTCC 1037 Query 945 AAGGCCGCCACCACCATATCAAGCCATGGGAATGCACCAACATGGC---TGGCCACTC-C 1000 |||||||| |||||| ||||||||||||||||||||||||||| ||||||| | | Sbjct 1038 GAGGCCGCCGCCACCACCTCAAGCCATGGGAATGCACCAACATGGAGGATGGCCAC-CGC 1096 Query 1001 AACATAT--A-CATCAAGGTGTACCACCACCACAACAACTACCTATGCA--CCATCATCA 1055 |||| || | || ||||||| |||||||| |||||||| ||| | || ||| || || Sbjct 1097 AACACATGCAGCAGCAAGGTGGACCACCACAACAACAACAACC-AC-CATACCAACACCA 1154 Query 1056 TCACATGTCTATACCTccaccaccaccaccacaccaAGGTTGA 1098 |||||||||||| |||||||||||||||| || | |||||||| Sbjct 1155 TCACATGTCTATGCCTCCACCACCACCAC-AC-C-AAGGTTGA 1194 > AT2G14550.1 | Symbols: | pseudogene, putative pre-mRNA splicing factor, non-consensus splice donor TA at exon 5; blastp match of 67% identity and 1.1e-68 P-value to GP|28374170|gb|AAH45264.1||BC045264 Similar to splicing factor 3b, subunit 4, 49kD {Xenopus laevis} | chr2:6202988-6204746 FORWARD LENGTH=1759 Length=1759 Score = 333 bits (180), Expect = 2e-90 Identities = 243/272 (89%), Gaps = 10/272 (4%) Strand=Plus/Plus Query 748 CCTGTCCCGATCCCGGCTCCACATCCACCACCACCACCACAAGTGTATCAAACTCAGCCA 807 ||||| || ||||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1443 CCTGTACCAATCCCGGGTCCACGTCCACCACCACAACCACAAGTGTATCAAACTCAGCCA 1502 Query 808 CCATCTTGGCCTTCTCAGCCACAACAAC---ACGGCTTAGTGGTTCCACCACCGCCCATG 864 ||||||||||| |||||||||||||||| ||||||||| ||||| |||| || ||| Sbjct 1503 CCATCTTGGCCATCTCAGCCACAACAACAATACGGCTTAGCGGTTCGACCA---CCTATG 1559 Query 865 CAATTCCGTCCGCCTCAAGGTCTGCAGCCGCAACCACCACCTCCTCAGTTTCATCATCAC 924 || |||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| Sbjct 1560 CAGTTCCGTCCGCCTCAAGGTATGCAGTCGCAACCACCACCTCCTCAGTTTCCTCATCAC 1619 Query 925 CAACAAGGTTTCGG-TGTTCCAAGGCCGCCACCACCATATCAAGCCATGGGAATGCACCA 983 ||||||||||| || || ||| |||| ||||||||||||||||||||||||||||||||| Sbjct 1620 CAACAAGGTTTTGGTTG-TCCGAGGCAGCCACCACCATATCAAGCCATGGGAATGCACCA 1678 Query 984 ACATGGCTGGCCACTC-CAACATATACATCAA 1014 |||||| ||||||| | |||||||| || ||| Sbjct 1679 ACATGGTTGGCCAC-CGCAACATATTCAGCAA 1709 Score = 158 bits (85), Expect = 1e-37 Identities = 91/94 (97%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 428 AGATAATGCGAGATCCCGATACTGGAAACCCACGAGGTTTCGGTTTCATTAGCTATGACT 487 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 971 AGATAATGCGAGATCCCGATACTGGAAACCCACGAGGTTTTGGTTTCATTAGCTATGACT 1030 Query 488 CTTTTGAGGCATCTGATGCTGCTATTGAGGCAAT 521 ||||||| |||||||||||||||||||||| ||| Sbjct 1031 CTTTTGAAGCATCTGATGCTGCTATTGAGGTAAT 1064 Score = 150 bits (81), Expect = 2e-35 Identities = 87/90 (97%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 515 AGGCAATGACTGGACAATATCTGAGTAGTCGTCAAATAACAGTCTCTTATGCATACAAGA 574 ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 1158 AGGCAATGACTGGACAATATCTGAGTAATCGTCAAATAACAGTCACTTATGCATACAAGA 1217 Query 575 AAGACACCAAAGGAGAGCGACACGGTACTC 604 ||||||||||||||||||| |||||||||| Sbjct 1218 AAGACACCAAAGGAGAGCGCCACGGTACTC 1247 Score = 135 bits (73), Expect = 7e-31 Identities = 79/82 (96%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1 ATGTCGACTCGAATAACTCCTGGTGTAGGAGCTAATCTTCTCGGCCAACACGCCACTGAA 60 ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 ATGACGACTCGAATAACTCCTGGTGTATGAGCTAATCTTCTCGGCCAACACGCCACTGAG 60 Query 61 AGGAACCAAGACGCCACCATCT 82 |||||||||||||||||||||| Sbjct 61 AGGAACCAAGACGCCACCATCT 82 Score = 111 bits (60), Expect = 1e-23 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 299 AGGCATCTCAAGATAAGAAGAGCTTGGATGTTGGTGCTAACCTTTTTATTGGAAACCTTG 358 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 675 AGGCATCTCAAGATAAGAAGAGCTTGGATGTTGGTGCTAACCTGTTTCTTGGAAACCTTG 734 Query 359 ATCCTG 364 |||||| Sbjct 735 ATCCTG 740 Score = 102 bits (55), Expect = 7e-21 Identities = 57/58 (98%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 244 GCAATTAAGGTTTATAACATGATTAAGCTCTATGGGGAGCCTATACGTGTTAAAAAGG 301 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GCAATTAAGGTTTTTAACATGATTAAGCTCTATGGGGAGCCTATACGTGTTAAAAAGG 594 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53814984240 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5