BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906179
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motif... 1131 0.0
AT2G14550.1 | Symbols: | pseudogene, putative pre-mRNA splicin... 333 2e-90
> AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031182-8033619 REVERSE LENGTH=1566
Length=1566
Score = 1131 bits (612), Expect = 0.0
Identities = 962/1123 (86%), Gaps = 56/1123 (5%)
Strand=Plus/Plus
Query 1 ATGTCGACTCGAATAACTCCTGGTGTAGGAGCTAATCTTCTCGGCCAACACGCCACTGAA 60
||| |||||||||| |||||||||| |||||||||||||||||||||||| || ||||
Sbjct 103 ATGACGACTCGAATCGCTCCTGGTGTTGGAGCTAATCTTCTCGGCCAACACTCCGCTGAG 162
Query 61 AGGAACCAAGACGCCACCATCTACGTCGGAAATCTCAG-TCCTCAGCTTTCTGAAGATTT 119
||||||||||||||||| | |||||||| |||| | | |||||||||||||||| ||
Sbjct 163 AGGAACCAAGACGCCACTGTTTACGTCGGTGGTCTC-GATGCTCAGCTTTCTGAAGAATT 221
Query 120 GCTTTTGGAATTGTTCGTACAAGCCGGACCAGTTGTTAGCGTCTTTATTCCAAAAGATAA 179
||||| |||||||||||| ||||| ||||| ||||||| |||| | | || |||||| |
Sbjct 222 GCTTTGGGAATTGTTCGTTCAAGCTGGACCTGTTGTTAATGTCTATGTACCGAAAGAT-A 280
Query 180 G-GTGACAAATCTTCAACA-AACATTTGGATTCGTTCAAT-TCCGTAATGAGGAAGATGC 236
| |||||||||||||| || ||| | ||||||| || ||| | |||| ||||||||||||
Sbjct 281 GAGTGACAAATCTTCATCAGAAC-TATGGATTCATTGAATAT-CGTAGTGAGGAAGATGC 338
Query 237 TGACTATGCAATTAAGGTT-TATAACATGATTAAGCTCTATGGGGAGCCTATACGTGTTA 295
||| ||||| ||||||||| | |||||||||||||||| | ||| |||||||||||||||
Sbjct 339 TGATTATGCGATTAAGGTTCT-TAACATGATTAAGCTCCACGGGAAGCCTATACGTGTTA 397
Query 296 AAAAGGCATCTCAAGATAAGAAGAGCTTGGATGTTGGTGCTAACCTTTTTATTGGAAACC 355
| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 398 ACAAGGCATCTCAAGATAAGAAGAGCCTGGATGTTGGTGCTAACCTTTTCATTGGAAACC 457
Query 356 TTGATCCTGATGTGGATGAAAAGATGTTGTATGATACTTTTAGCGCGTTTGGTATGGTTG 415
|||| |||||||||||||| ||| | |||||||||||||| || || |||||| || |||
Sbjct 458 TTGACCCTGATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTG 517
Query 416 CTGATCATCCTAAGATAATGCGAGATCCCGATACTGGAAACCCACGAGGTTTCGGTTTCA 475
|| | |||||||||||||| |||||||||||||||||||| |||||||||| |||||||
Sbjct 518 CTTCTAATCCTAAGATAATGAGAGATCCCGATACTGGAAACTCACGAGGTTTTGGTTTCA 577
Query 476 TTAGCTATGACTCTTTTGAGGCATCTGATGCTGCTATTGAGGCAATGACTGGACAATATC 535
| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 578 TCAGCTATGACTCCTTTGAAGCATCTGATGCTGCTATTGAGTCAATGACTGGACAATATC 637
Query 536 TGAGTAGTCGTCAAATAACAGTCTCTTATGCATACAAGAAAGACACCAAAGGAGAGCGAC 595
| |||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 638 TCAGTAATCGTCAAATCACAGTCTCTTACGCATACAAGAAAGACACCAAAGGAGAGCGCC 697
Query 596 ACGGTACTCAAGCAGAGAGGCTTTTGGCTGCTACAAATCCAAGTTCCCA-AAGAAGCAGA 654
| ||||||| |||||||||||||||||| || |||||||||| | |||| || |||||||
Sbjct 698 ATGGTACTCCAGCAGAGAGGCTTTTGGCAGCCACAAATCCAACTGCCCAGAA-AAGCAGA 756
Query 655 CCCCATACGCTATTCGCAAGTGGCCCCTCTA-CGCAGATTAATGCTCCTAAAGTTAACGG 713
||||||||||||||||||| ||| ||||| | | ||| | |||||| ||||||| ||
Sbjct 757 CCCCATACGCTATTCGCAA-TGGGCCCTCCATC-CAG-T----GCTCCTCAAGTTAATGG 809
Query 714 TCTACCACGTCCGTTCGCTAATGG-AGGTATGCAGCCTGTCCCGAT-CCCGGCTCCACAT 771
||||||||||||||| ||||| || || ||||| ||||||||||| |||| |||| | |
Sbjct 810 TCTACCACGTCCGTTTGCTAACGGCAGC-ATGCAACCTGTCCCGATTCCCG-CTCCCCGT 867
Query 772 CCACCACCACCACC------ACAAGTGTATCAAACTCAGCCACCATCTTGGCCTTCTCAG 825
| |||||||||||| |||||| |||||||||||||||||||| ||||| ||||||
Sbjct 868 CAACCACCACCACCTCCTCCACAAGTATATCAAACTCAGCCACCATCCTGGCCATCTCAG 927
Query 826 CCACAACAACACGGCTTAGTGGTTCCACCACCGCCCATGCAATTCCGTCCGCCTCAAGGT 885
|||||||||||| || | |||| |||||||| | |||||||||||||| ||||| |||
Sbjct 928 CCACAACAACACAGC--A-TGGTCCCACCACC-C--ATGCAATTCCGTCCACCTCAGGGT 981
Query 886 CTGCAGCCGCAACCACCACCTCCTCAGTTTCATCA-TCACCAACAAGGTTTCGGTGTTCC 944
||| |||| | ||||||||||||||||| | | |||||||||||||||||||| |||
Sbjct 982 ATGCCTCCGC--C-ACCACCTCCTCAGTTTC-TAAATCACCAACAAGGTTTCGGTGGTCC 1037
Query 945 AAGGCCGCCACCACCATATCAAGCCATGGGAATGCACCAACATGGC---TGGCCACTC-C 1000
|||||||| |||||| ||||||||||||||||||||||||||| ||||||| | |
Sbjct 1038 GAGGCCGCCGCCACCACCTCAAGCCATGGGAATGCACCAACATGGAGGATGGCCAC-CGC 1096
Query 1001 AACATAT--A-CATCAAGGTGTACCACCACCACAACAACTACCTATGCA--CCATCATCA 1055
|||| || | || ||||||| |||||||| |||||||| ||| | || ||| || ||
Sbjct 1097 AACACATGCAGCAGCAAGGTGGACCACCACAACAACAACAACC-AC-CATACCAACACCA 1154
Query 1056 TCACATGTCTATACCTccaccaccaccaccacaccaAGGTTGA 1098
|||||||||||| |||||||||||||||| || | ||||||||
Sbjct 1155 TCACATGTCTATGCCTCCACCACCACCAC-AC-C-AAGGTTGA 1194
> AT2G14550.1 | Symbols: | pseudogene, putative pre-mRNA splicing
factor, non-consensus splice donor TA at exon 5; blastp
match of 67% identity and 1.1e-68 P-value to GP|28374170|gb|AAH45264.1||BC045264
Similar to splicing factor 3b, subunit
4, 49kD {Xenopus laevis} | chr2:6202988-6204746 FORWARD LENGTH=1759
Length=1759
Score = 333 bits (180), Expect = 2e-90
Identities = 243/272 (89%), Gaps = 10/272 (4%)
Strand=Plus/Plus
Query 748 CCTGTCCCGATCCCGGCTCCACATCCACCACCACCACCACAAGTGTATCAAACTCAGCCA 807
||||| || ||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1443 CCTGTACCAATCCCGGGTCCACGTCCACCACCACAACCACAAGTGTATCAAACTCAGCCA 1502
Query 808 CCATCTTGGCCTTCTCAGCCACAACAAC---ACGGCTTAGTGGTTCCACCACCGCCCATG 864
||||||||||| |||||||||||||||| ||||||||| ||||| |||| || |||
Sbjct 1503 CCATCTTGGCCATCTCAGCCACAACAACAATACGGCTTAGCGGTTCGACCA---CCTATG 1559
Query 865 CAATTCCGTCCGCCTCAAGGTCTGCAGCCGCAACCACCACCTCCTCAGTTTCATCATCAC 924
|| |||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct 1560 CAGTTCCGTCCGCCTCAAGGTATGCAGTCGCAACCACCACCTCCTCAGTTTCCTCATCAC 1619
Query 925 CAACAAGGTTTCGG-TGTTCCAAGGCCGCCACCACCATATCAAGCCATGGGAATGCACCA 983
||||||||||| || || ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1620 CAACAAGGTTTTGGTTG-TCCGAGGCAGCCACCACCATATCAAGCCATGGGAATGCACCA 1678
Query 984 ACATGGCTGGCCACTC-CAACATATACATCAA 1014
|||||| ||||||| | |||||||| || |||
Sbjct 1679 ACATGGTTGGCCAC-CGCAACATATTCAGCAA 1709
Score = 158 bits (85), Expect = 1e-37
Identities = 91/94 (97%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 428 AGATAATGCGAGATCCCGATACTGGAAACCCACGAGGTTTCGGTTTCATTAGCTATGACT 487
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 971 AGATAATGCGAGATCCCGATACTGGAAACCCACGAGGTTTTGGTTTCATTAGCTATGACT 1030
Query 488 CTTTTGAGGCATCTGATGCTGCTATTGAGGCAAT 521
||||||| |||||||||||||||||||||| |||
Sbjct 1031 CTTTTGAAGCATCTGATGCTGCTATTGAGGTAAT 1064
Score = 150 bits (81), Expect = 2e-35
Identities = 87/90 (97%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 515 AGGCAATGACTGGACAATATCTGAGTAGTCGTCAAATAACAGTCTCTTATGCATACAAGA 574
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1158 AGGCAATGACTGGACAATATCTGAGTAATCGTCAAATAACAGTCACTTATGCATACAAGA 1217
Query 575 AAGACACCAAAGGAGAGCGACACGGTACTC 604
||||||||||||||||||| ||||||||||
Sbjct 1218 AAGACACCAAAGGAGAGCGCCACGGTACTC 1247
Score = 135 bits (73), Expect = 7e-31
Identities = 79/82 (96%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 1 ATGTCGACTCGAATAACTCCTGGTGTAGGAGCTAATCTTCTCGGCCAACACGCCACTGAA 60
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGACGACTCGAATAACTCCTGGTGTATGAGCTAATCTTCTCGGCCAACACGCCACTGAG 60
Query 61 AGGAACCAAGACGCCACCATCT 82
||||||||||||||||||||||
Sbjct 61 AGGAACCAAGACGCCACCATCT 82
Score = 111 bits (60), Expect = 1e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 299 AGGCATCTCAAGATAAGAAGAGCTTGGATGTTGGTGCTAACCTTTTTATTGGAAACCTTG 358
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 675 AGGCATCTCAAGATAAGAAGAGCTTGGATGTTGGTGCTAACCTGTTTCTTGGAAACCTTG 734
Query 359 ATCCTG 364
||||||
Sbjct 735 ATCCTG 740
Score = 102 bits (55), Expect = 7e-21
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 244 GCAATTAAGGTTTATAACATGATTAAGCTCTATGGGGAGCCTATACGTGTTAAAAAGG 301
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GCAATTAAGGTTTTTAACATGATTAAGCTCTATGGGGAGCCTATACGTGTTAAAAAGG 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5