BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906183
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14580.1 | Symbols: ATPRB1, PRB1 | basic pathogenesis-relate... 684 0.0
AT2G14610.1 | Symbols: PR1, PR 1, ATPR1 | pathogenesis-related ... 527 4e-149
> AT2G14580.1 | Symbols: ATPRB1, PRB1 | basic pathogenesis-related
protein 1 | chr2:6225535-6226224 REVERSE LENGTH=690
Length=690
Score = 684 bits (370), Expect = 0.0
Identities = 448/486 (92%), Gaps = 4/486 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGTCACTAGCTATTCTCGCATTCTAATAATCTTGGCCGCCCTTGTAGGTGCTCTT 60
||||||||||| ||||| ||||| ||||||||||||||||| || ||||| |||||||||
Sbjct 37 ATGAAAGTCACAAGCTACTCTCGAATTCTAATAATCTTGGCAGCACTTGTGGGTGCTCTT 96
Query 61 GTTGTTCCCTCGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATGCTCACAACCAGGCA 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 GTTGTTCCCTTGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATGCTCACAACCAGGCA 156
Query 121 CGGTCGCAGGTAGGCGTAGGCCCCATACAGTGGGACGAGGGGGTTGCAGCCTACGCTCGG 180
|| |||||| |||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 157 CGATCGCAGATAGGCGTAGGCCCCATGCAGTGGGACGAAGGACTTGCAGCCTACGCTCGG 216
Query 181 AGCTACGCAGAG-AACCTAAAAGGCGACTGCAGACTCGTACATTCCGGTGGGCCTTACGG 239
| ||||||| | ||| ||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 217 AACTACGCAAACCAAC-TAAAAGGAGACTGCAGACTCGTACATTCCCGTGGGCCTTACGG 275
Query 240 GGAGAACTTGGCCG-GTAGTAGCGGTGACTTTTCTGGCGTCGCTGCTGTGAACTTGTGGG 298
|||||||||||| | ||| |||||||||| ||||| || ||||| |||||||||||||
Sbjct 276 GGAGAACTTGGCAAAG-AGTGGCGGTGACTTGTCTGGTGTTGCTGCCGTGAACTTGTGGG 334
Query 299 TTAACGAGAAGGCTAACTACAACTACAATTCAAACACGTGCAACGGAGTTTGCGGTCACT 358
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 335 TTAACGAGAAGGCTAACTACAACTACGATACAAACACGTGCAACGGAGTTTGCGGTCACT 394
Query 359 ACACTCAAGTTGTTTGGAGAAATTCAGTGAGACTCGGATGTGCCAAAGTGAGGTGTAACA 418
||||||| || |||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 395 ACACTCAGGTCGTTTGGAGAAATTCTGTGAGACTCGGATGTGCTAAAGTGAGATGTAACA 454
Query 419 ATGGTGGAACCATCATTAGTTGCAATTATAATCCTCCGGGGAACTATGCGAACCAGAAGC 478
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 455 ATGGTGGAACCATCATCAGTTGCAATTATGATCCTCCGGGGAACTATGCGAACCAGAAGC 514
Query 479 CTTACT 484
||||||
Sbjct 515 CTTACT 520
> AT2G14610.1 | Symbols: PR1, PR 1, ATPR1 | pathogenesis-related
gene 1 | chr2:6241704-6242463 REVERSE LENGTH=760
Length=760
Score = 527 bits (285), Expect = 4e-149
Identities = 419/483 (87%), Gaps = 12/483 (2%)
Strand=Plus/Plus
Query 10 ACTAGCTATTCTCGCA-TTCTAATAATCTTGGCCGCCCTTGTAGGTGCTCTTGTTGTTCC 68
||| |||||||||| | || |||| |||| | || |||||||||||||||||| ||||
Sbjct 44 ACTGGCTATTCTCG-ATTTTTAATCGTCTTTGTAGCTCTTGTAGGTGCTCTTGTTCTTCC 102
Query 69 CTCGAAGGCTCAAGACAG-CCAGCAAGACTATGTAAATGCTCACAACCAGGCACG-GTCG 126
|||||| |||||||| || ||| ||||| ||| ||| | ||||||||||||||| | |
Sbjct 103 CTCGAAAGCTCAAGATAGCCCA-CAAGATTATCTAAGGGTTCACAACCAGGCACGAGGAG 161
Query 127 CAGGTAGGCGTAGGCCCCATACAGTGGGACGAGGGGGTTGCAGCCTACGCTCGGAGCTAC 186
| |||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||
Sbjct 162 C-GGTAGGCGTAGGTCCCATGCAGTGGGACGAGAGGGTTGCAGCCTATGCTCGGAGCTAC 220
Query 187 GCAG-AGAACCTAAAAGGCGACTGCAGACTCGTACATTCCGGTGGGCCTTACGGGGAGAA 245
|||| | || |||| |||| ||||||||||| |||| || ||||||||||||||||| ||
Sbjct 221 GCAGAACAA-CTAAGAGGCAACTGCAGACTCATACACTCTGGTGGGCCTTACGGGGAAAA 279
Query 246 CTTGGCC-GGTAGTAGCGGTGACTTTTCTGGCGTCGCTGCTGTGAACTTGTGGGTTAACG 304
||| ||| || ||||||||||||| ||||||||| | || |||||| ||||||||| ||
Sbjct 280 CTTAGCCTGG-GGTAGCGGTGACTTGTCTGGCGTCTCCGCCGTGAACATGTGGGTTAGCG 338
Query 305 AGAAGGCTAACTACAACTACAATTCAAACACGTGCAACGGAGTTTGCGGTCACTACACTC 364
|||||||||||||||||||| | | ||||||||||| |||||||| |||||||||||||
Sbjct 339 AGAAGGCTAACTACAACTACGCTGCGAACACGTGCAATGGAGTTTGTGGTCACTACACTC 398
Query 365 AAGTTGTTTGGAGAAATTCAGTGAGACTCGGATGTGCCAAAGTGAGGTGTAACAATGGTG 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 AAGTTGTTTGGAGAAAGTCAGTGAGACTCGGATGTGCCAAAGTGAGGTGTAACAATGGTG 458
Query 425 GAACCATCATTAGTTGCAATTATAATCCTCCG-GGGAACTATGCGAACCAGAAGCCTTAC 483
||||||| || |||||||| ||| |||||| | ||||| |||| |||| ||||||| |||
Sbjct 459 GAACCATAATCAGTTGCAACTATGATCCTC-GTGGGAATTATGTGAACGAGAAGCCATAC 517
Query 484 TAA 486
|||
Sbjct 518 TAA 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23157941767
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5