BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906184
Length=489
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14580.1 | Symbols: ATPRB1, PRB1 | basic pathogenesis-relate... 730 0.0
> AT2G14580.1 | Symbols: ATPRB1, PRB1 | basic pathogenesis-related
protein 1 | chr2:6225535-6226224 REVERSE LENGTH=690
Length=690
Score = 730 bits (395), Expect = 0.0
Identities = 457/487 (94%), Gaps = 3/487 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGTCACTAGCTCCTCTCGCATTCTAATAATCTTGGCCGCCCTTGTAGGTGCTCTT 60
||||||||||| |||| |||||| ||||||||||||||||| || ||||| |||||||||
Sbjct 37 ATGAAAGTCACAAGCTACTCTCGAATTCTAATAATCTTGGCAGCACTTGTGGGTGCTCTT 96
Query 61 GTTGTTCCCTCGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATTCTCACAACCAGGCA 120
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 97 GTTGTTCCCTTGAAGGCTCAAGACAGCCAGCAAGACTATGTAAATGCTCACAACCAGGCA 156
Query 121 CGATCGCAGGTAGGCGTAGGCCCCTTGCAATGGGACGAGGGACTTGCAGCCTACGCTCGG 180
||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||
Sbjct 157 CGATCGCAGATAGGCGTAGGCCCCATGCAGTGGGACGAAGGACTTGCAGCCTACGCTCGG 216
Query 181 AGCTACGCAAACCAACTAAAAGGCGACTGCAGACTCGTACATTCCGGTGGCCCTTACGGG 240
| ||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 217 AACTACGCAAACCAACTAAAAGGAGACTGCAGACTCGTACATTCCCGTGGGCCTTACGGG 276
Query 241 GAGAACTTGGCCAAGAGTGGCGGTGATTTGTCTGGTGTTGCTGCCGTGAATTTGTGGGTA 300
||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 277 GAGAACTTGGCAAAGAGTGGCGGTGACTTGTCTGGTGTTGCTGCCGTGAACTTGTGGGTT 336
Query 301 AACGAGAAGGCTAACTACAACTATAATACAAACACGTGCAATGGAGTTTGCGGACACTAC 360
||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 337 AACGAGAAGGCTAACTACAACTACGATACAAACACGTGCAACGGAGTTTGCGGTCACTAC 396
Query 361 ACTCAGGTCGTTTGGAGAAATTCGGTGAGACTCGGATGTGCTAAAGTGAGGTGTAACAAT 420
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 397 ACTCAGGTCGTTTGGAGAAATTCTGTGAGACTCGGATGTGCTAAAGTGAGATGTAACAA- 455
Query 421 GGTGGTGGAACCATCATCAGTTGCAATTATGATCCTCCGGGGAATTATGCGAACCAGAAG 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 456 --TGGTGGAACCATCATCAGTTGCAATTATGATCCTCCGGGGAACTATGCGAACCAGAAG 513
Query 481 CCTTACT 487
|||||||
Sbjct 514 CCTTACT 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23308644208
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5