BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906204
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14680.2 | Symbols: MEE13 | myosin heavy chain-related | chr... 2209 0.0
> AT2G14680.2 | Symbols: MEE13 | myosin heavy chain-related | chr2:6277802-6283940
FORWARD LENGTH=2298
Length=2298
Score = 2209 bits (1196), Expect = 0.0
Identities = 1298/1348 (96%), Gaps = 4/1348 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTTAATTTAGATGAGAATGAGAACCTAAAGGCTCGGATCAAACAACTTGAACAT 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 166 ATGGATCTTAATTTAGATGAAAATGAGAATCTAAAGGCTCGGATCAAACAACTTGAACAT 225
Query 61 GAGCGTAACGAACTACAGAAAGATATTGAACAGTTGTGCATGCAACAAGGTGGACCTAGC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 GAGCGTAATGAACTACAGAAAGATATTGAACAGTTGTGCATGCAACAAGGTGGACCTAGC 285
Query 121 ATTCTTGGTGTGGCTACTCGGATGCATTTCCAGAGGACAGCTAGCTTGGAGCAGGAAATC 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 ATTCTTGGTGTGGCTGCTCGGATGCATTTCCAGAGGACAGCTAGCTTGGAGCAGGAAATA 345
Query 181 GAGAGCTTAAAACTGAAGTTGGCTGCTTGCACAAGGGAGAAACACAATCTTCAAGAGGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GAGAGCTTAAAACTGAAGTTGGCTGCTTGCACAAGGGAGAAACACAATCTTCAAGAGGAG 405
Query 241 CTTGCAGAAGCTTACCGTGTGAAAACTCAGTTAGCAGATTTACATGCTGGAGAAGTAGCA 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 406 CTTGCAGAAGCTTACCGTGTGAAAGCTCAGTTAGCAGATTTACATGCTGGAGAAGTAGCA 465
Query 301 AAGAACTTGGAAGCAGAAAAGCAGGTTAGATTTTTCCAGGGTTCTGTGGCAGCTGCTTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AAGAACTTGGAAGCAGAAAAGCAGGTTAGATTTTTCCAGGGTTCTGTGGCAGCTGCTTTT 525
Query 361 TCTGAAAGGGATAAGTCAGTAATGGAGGCCGAAAAAGCTGAAGAGAATGCTGAAATGATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TCTGAAAGGGATAAGTCAGTAATGGAGGCCGAAAAAGCTGAAGAGAATGCTGAAATGATG 585
Query 421 TCCCAGAAACTTGGTGAAATTGAGATGCGGTTGGAAGAACTTAGCTCAGATTGTCTCGTA 480
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 586 TCACAGAAACTTAGTGAAATTGAGATGCGGTTGGAAGAACTTAGCTCAGATTGTCTTGTA 645
Query 481 CAGAAGAGACTAAATGACACTTTGCAAGCTGACTTGGCAAAACTTGAAGAACAGACTAGA 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 646 CAGAAGAGACTAAATGACACATTGCAAGCTGACTTGGCAAAACTTGAAGAACAGACTAGA 705
Query 541 ACATATGCACAGGTGATTGAGAAGTTCTATGATATCCGTAAAGCTTCGCTCTGTGAGTCC 600
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 706 ACATATGCAGGGGTGATTGAGAAGTTCTATGATATCCGTAAAGCTTCACTCTGTGAGTCC 765
Query 601 CTTGAAATGAGTTTGCAC-AATAAGTGTGCAAGTTTATTGGATGATCCTATAGAATCATG 659
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 766 CTTGAAATGAGTTTGCATGAA-AAGTGTGCAAGTTTATTGGATGATCCTATAGAATCATG 824
Query 660 GACGTTCAATGATCCTTCAACATCAGAATATGTAGCTGCACTAGAAGGAGAGTTGGGGAA 719
||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct 825 GACTTTCAATGATCCTTCAACTTCAGATTATGTAGCTGCACTGGAAGGAGAGTTGGGAAA 884
Query 720 GGTTAAGAACACTGTGGATAATCTTCAGAGTAAATTACGAGTGGGCTTAGAAATTGAAAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 885 GGTTAAGAACACTGTGGATAATCTTCAGAGTAAATTACGAGTGGGCTTAGAAATTGAGAA 944
Query 780 TCATTTGAAGAAGAGGGTTCGTGCGTTGGAAAAGAAGAATATTGTTGCAGATAGGCTGAT 839
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 945 TCATTTGAAGAAGAGGGTTCGTGCATTGGAAAAGAAGAATATTGTTGCAGATGGGCTGAT 1004
Query 840 CGTTAGTGGCATTACAGACATACGCCATCACCATTCCCAACTGAGGGCCTACATCATTGA 899
||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1005 CGTTAATGGCATTACAGATATTCGCCATCATCATTCCCAACTGAGGGCCTACATCATTGC 1064
Query 900 TTTACTTAATGAAGAAGGACTATACATTAAATCGATTTCCAAAAATGTTGAAGAAAAACT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TTTACTTAATGAAGAAGGACTATACATTAAATCGATTTCCAAAAATGTTGAAGAAAAACT 1124
Query 960 TAAACTTCACTCATTGGAAATACGGAATGTAGTGCCACTGCAACATGATTTCAAGCCTGA 1019
|||||||||||||| ||| ||| |||||||||||||| |||||| ||||| || |||||
Sbjct 1125 TAAACTTCACTCATCAGAAGTACAGAATGTAGTGCCACCGCAACACGATTTAAAACCTGA 1184
Query 1020 TGAGTCTGAATGTCGGGATGTGCATATAACTACAGTTGTTGAATCTTGCCAAGTAACTAA 1079
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1185 TGAGTCTGAATGCCGGGATGTGCATATGACTACAGTTGTTGAATCTTGCCAAGTAACGAA 1244
Query 1080 GCTTGCGGAAGCTAGTATTGCCAATATCATGGCTGAAAGTAGAGGGGATACATCTGAAGC 1139
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1245 GCTTGCGGAAGCTAGTATTGCCAAAATCATGGCTGAAAGTAGAGGGGATGCATCTGAAGC 1304
Query 1140 ACTT-GCACAAGCATTACAAGAGAAGGTTGGAGCTCTTTTGCTTCTATCACAGCAGGAAG 1198
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1305 -CTTTGCACAAGCATTACAAGAGAAGGTTGGAGCTCTTTTACTTCTATCACAGCAGGAGG 1363
Query 1199 AGAGGCATTTACATGAAGAAAATGTCAATGCAGCTCTCCAGCAGAAAGTAGATGAGCTTC 1258
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1364 AGAGGCATTTACATGAAGAAAATGTCAATGCAGCTCTTCAGCAGAAAGTAGATGAGCTTC 1423
Query 1259 AAAGGAATATCTTGCAGGTTACCAACGAAAAGGTGAGAACCCTTATGGAGTTAGCACAAC 1318
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1424 AAAGGAATATCTTGCAGGTGACCAATGAAAAGGTGAGAACCCTTATGGAGTTAGCCCAAC 1483
Query 1319 TACGACAGGAATATCAGTCGCTAAGAGA 1346
||||||||||||||||||||||||||||
Sbjct 1484 TACGACAGGAATATCAGTCGCTAAGAGA 1511
Score = 835 bits (452), Expect = 0.0
Identities = 515/546 (94%), Gaps = 2/546 (0%)
Strand=Plus/Plus
Query 1346 ACAAATTGAGTGGTACAAGTGGGGAAGAAACAACGGAAAACAGTGGCAGGATAGGTT-TC 1404
||||| ||||||||||||| | ||||||| |||||| |||||||||||||||| ||| ||
Sbjct 1580 ACAAAATGAGTGGTACAAGAGAGGAAGAATCAACGGGAAACAGTGGCAGGATA-GTTATC 1638
Query 1405 TCCAATGAGAAAGAGGGAAGACTAAAGAATATGTGGAAGAAGTCTTACATAAACCGTTGG 1464
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1639 TCCAATGAGAAAGATGGAAGACTAAAGAATATGTGGAAGAAATCTTACATAAACCGTTGG 1698
Query 1465 ATTGACCCAAGTTCAAGAGGCGGAAGTCACTTGAACAGTGAAGCAGATTATGCCAGTAAC 1524
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1699 ATTGACCCAAGTTCAAGAGGCGGAAGTCACTTGAACACTGAAGCAGATTATGCCAGTAAC 1758
Query 1525 ATTGATTATTCCAGAATGAAAGTAGAATACGCAGCTATAAAAGAAAACCTGGAAAGCATG 1584
|| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1759 ATCGAATATTCCAGAATGAAAGTAGAATATGCAGCTATAAAAGAGAACCTGGAAAGCATG 1818
Query 1585 GGACACTTGACTAGTTCAATCCGCAGGCTTCGTCTAGCGCTCTTGAAGGTAAAGGAATCG 1644
|| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1819 GGGCACTTGACGACTTCAATCCGCAGGCTCCGTCTAGCGCTCTTGAAGGTAAAGGAATTA 1878
Query 1645 AATGATACGGAAACAACTGCGAGAAGTTGCGAAGTAGCGATTTCCAACATCCTTGTGGAG 1704
|||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1879 AATGATACTGAAACAACTGCAAGAAGTTGCGAAGTAGCGATTGCCAACATCCTTGTGGAG 1938
Query 1705 GCAACCCATTTAAAGACTGCCCTTGGCATCTCTATACCCATTAGCTGGTCGGCGGAATCA 1764
||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1939 GCAACCCATTTGAAGACTGCCCTTGGGATCTCCATACCAATTAGCTGGTCGGCGGAATCA 1998
Query 1765 GATATGGAATCAGTTACTGATGGCGAATCGAGCTGTGAAAGGACGGATTCTGTTTCTGCT 1824
|| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1999 GACATTGAATCAGTTACTGATGGCGAGTCGAGCTGTGAAAGGACCGATTCTGTTTCTGCT 2058
Query 1825 GCAGGATTTGAGATGGTGGAGCTTGTTATTCTAGCAGCCGAGATAATGAAAGAACAACAC 1884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2059 GCAGGATTTGAGATGGTGGAGCTTGTTATTCTAGCAGCCGAGATAATGAAAGAACAACAC 2118
Query 1885 CATTGA 1890
||||||
Sbjct 2119 CATTGA 2124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93573815880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5