BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg906204 Length=1890 Score E Sequences producing significant alignments: (Bits) Value AT2G14680.2 | Symbols: MEE13 | myosin heavy chain-related | chr... 2209 0.0 > AT2G14680.2 | Symbols: MEE13 | myosin heavy chain-related | chr2:6277802-6283940 FORWARD LENGTH=2298 Length=2298 Score = 2209 bits (1196), Expect = 0.0 Identities = 1298/1348 (96%), Gaps = 4/1348 (0%) Strand=Plus/Plus Query 1 ATGGATCTTAATTTAGATGAGAATGAGAACCTAAAGGCTCGGATCAAACAACTTGAACAT 60 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 166 ATGGATCTTAATTTAGATGAAAATGAGAATCTAAAGGCTCGGATCAAACAACTTGAACAT 225 Query 61 GAGCGTAACGAACTACAGAAAGATATTGAACAGTTGTGCATGCAACAAGGTGGACCTAGC 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 226 GAGCGTAATGAACTACAGAAAGATATTGAACAGTTGTGCATGCAACAAGGTGGACCTAGC 285 Query 121 ATTCTTGGTGTGGCTACTCGGATGCATTTCCAGAGGACAGCTAGCTTGGAGCAGGAAATC 180 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 ATTCTTGGTGTGGCTGCTCGGATGCATTTCCAGAGGACAGCTAGCTTGGAGCAGGAAATA 345 Query 181 GAGAGCTTAAAACTGAAGTTGGCTGCTTGCACAAGGGAGAAACACAATCTTCAAGAGGAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 346 GAGAGCTTAAAACTGAAGTTGGCTGCTTGCACAAGGGAGAAACACAATCTTCAAGAGGAG 405 Query 241 CTTGCAGAAGCTTACCGTGTGAAAACTCAGTTAGCAGATTTACATGCTGGAGAAGTAGCA 300 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 406 CTTGCAGAAGCTTACCGTGTGAAAGCTCAGTTAGCAGATTTACATGCTGGAGAAGTAGCA 465 Query 301 AAGAACTTGGAAGCAGAAAAGCAGGTTAGATTTTTCCAGGGTTCTGTGGCAGCTGCTTTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 AAGAACTTGGAAGCAGAAAAGCAGGTTAGATTTTTCCAGGGTTCTGTGGCAGCTGCTTTT 525 Query 361 TCTGAAAGGGATAAGTCAGTAATGGAGGCCGAAAAAGCTGAAGAGAATGCTGAAATGATG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 TCTGAAAGGGATAAGTCAGTAATGGAGGCCGAAAAAGCTGAAGAGAATGCTGAAATGATG 585 Query 421 TCCCAGAAACTTGGTGAAATTGAGATGCGGTTGGAAGAACTTAGCTCAGATTGTCTCGTA 480 || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 586 TCACAGAAACTTAGTGAAATTGAGATGCGGTTGGAAGAACTTAGCTCAGATTGTCTTGTA 645 Query 481 CAGAAGAGACTAAATGACACTTTGCAAGCTGACTTGGCAAAACTTGAAGAACAGACTAGA 540 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 646 CAGAAGAGACTAAATGACACATTGCAAGCTGACTTGGCAAAACTTGAAGAACAGACTAGA 705 Query 541 ACATATGCACAGGTGATTGAGAAGTTCTATGATATCCGTAAAGCTTCGCTCTGTGAGTCC 600 ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 706 ACATATGCAGGGGTGATTGAGAAGTTCTATGATATCCGTAAAGCTTCACTCTGTGAGTCC 765 Query 601 CTTGAAATGAGTTTGCAC-AATAAGTGTGCAAGTTTATTGGATGATCCTATAGAATCATG 659 ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 766 CTTGAAATGAGTTTGCATGAA-AAGTGTGCAAGTTTATTGGATGATCCTATAGAATCATG 824 Query 660 GACGTTCAATGATCCTTCAACATCAGAATATGTAGCTGCACTAGAAGGAGAGTTGGGGAA 719 ||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || Sbjct 825 GACTTTCAATGATCCTTCAACTTCAGATTATGTAGCTGCACTGGAAGGAGAGTTGGGAAA 884 Query 720 GGTTAAGAACACTGTGGATAATCTTCAGAGTAAATTACGAGTGGGCTTAGAAATTGAAAA 779 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 885 GGTTAAGAACACTGTGGATAATCTTCAGAGTAAATTACGAGTGGGCTTAGAAATTGAGAA 944 Query 780 TCATTTGAAGAAGAGGGTTCGTGCGTTGGAAAAGAAGAATATTGTTGCAGATAGGCTGAT 839 |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 945 TCATTTGAAGAAGAGGGTTCGTGCATTGGAAAAGAAGAATATTGTTGCAGATGGGCTGAT 1004 Query 840 CGTTAGTGGCATTACAGACATACGCCATCACCATTCCCAACTGAGGGCCTACATCATTGA 899 ||||| |||||||||||| || |||||||| |||||||||||||||||||||||||||| Sbjct 1005 CGTTAATGGCATTACAGATATTCGCCATCATCATTCCCAACTGAGGGCCTACATCATTGC 1064 Query 900 TTTACTTAATGAAGAAGGACTATACATTAAATCGATTTCCAAAAATGTTGAAGAAAAACT 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1065 TTTACTTAATGAAGAAGGACTATACATTAAATCGATTTCCAAAAATGTTGAAGAAAAACT 1124 Query 960 TAAACTTCACTCATTGGAAATACGGAATGTAGTGCCACTGCAACATGATTTCAAGCCTGA 1019 |||||||||||||| ||| ||| |||||||||||||| |||||| ||||| || ||||| Sbjct 1125 TAAACTTCACTCATCAGAAGTACAGAATGTAGTGCCACCGCAACACGATTTAAAACCTGA 1184 Query 1020 TGAGTCTGAATGTCGGGATGTGCATATAACTACAGTTGTTGAATCTTGCCAAGTAACTAA 1079 |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1185 TGAGTCTGAATGCCGGGATGTGCATATGACTACAGTTGTTGAATCTTGCCAAGTAACGAA 1244 Query 1080 GCTTGCGGAAGCTAGTATTGCCAATATCATGGCTGAAAGTAGAGGGGATACATCTGAAGC 1139 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 1245 GCTTGCGGAAGCTAGTATTGCCAAAATCATGGCTGAAAGTAGAGGGGATGCATCTGAAGC 1304 Query 1140 ACTT-GCACAAGCATTACAAGAGAAGGTTGGAGCTCTTTTGCTTCTATCACAGCAGGAAG 1198 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1305 -CTTTGCACAAGCATTACAAGAGAAGGTTGGAGCTCTTTTACTTCTATCACAGCAGGAGG 1363 Query 1199 AGAGGCATTTACATGAAGAAAATGTCAATGCAGCTCTCCAGCAGAAAGTAGATGAGCTTC 1258 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1364 AGAGGCATTTACATGAAGAAAATGTCAATGCAGCTCTTCAGCAGAAAGTAGATGAGCTTC 1423 Query 1259 AAAGGAATATCTTGCAGGTTACCAACGAAAAGGTGAGAACCCTTATGGAGTTAGCACAAC 1318 ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct 1424 AAAGGAATATCTTGCAGGTGACCAATGAAAAGGTGAGAACCCTTATGGAGTTAGCCCAAC 1483 Query 1319 TACGACAGGAATATCAGTCGCTAAGAGA 1346 |||||||||||||||||||||||||||| Sbjct 1484 TACGACAGGAATATCAGTCGCTAAGAGA 1511 Score = 835 bits (452), Expect = 0.0 Identities = 515/546 (94%), Gaps = 2/546 (0%) Strand=Plus/Plus Query 1346 ACAAATTGAGTGGTACAAGTGGGGAAGAAACAACGGAAAACAGTGGCAGGATAGGTT-TC 1404 ||||| ||||||||||||| | ||||||| |||||| |||||||||||||||| ||| || Sbjct 1580 ACAAAATGAGTGGTACAAGAGAGGAAGAATCAACGGGAAACAGTGGCAGGATA-GTTATC 1638 Query 1405 TCCAATGAGAAAGAGGGAAGACTAAAGAATATGTGGAAGAAGTCTTACATAAACCGTTGG 1464 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1639 TCCAATGAGAAAGATGGAAGACTAAAGAATATGTGGAAGAAATCTTACATAAACCGTTGG 1698 Query 1465 ATTGACCCAAGTTCAAGAGGCGGAAGTCACTTGAACAGTGAAGCAGATTATGCCAGTAAC 1524 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1699 ATTGACCCAAGTTCAAGAGGCGGAAGTCACTTGAACACTGAAGCAGATTATGCCAGTAAC 1758 Query 1525 ATTGATTATTCCAGAATGAAAGTAGAATACGCAGCTATAAAAGAAAACCTGGAAAGCATG 1584 || || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1759 ATCGAATATTCCAGAATGAAAGTAGAATATGCAGCTATAAAAGAGAACCTGGAAAGCATG 1818 Query 1585 GGACACTTGACTAGTTCAATCCGCAGGCTTCGTCTAGCGCTCTTGAAGGTAAAGGAATCG 1644 || |||||||| | ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1819 GGGCACTTGACGACTTCAATCCGCAGGCTCCGTCTAGCGCTCTTGAAGGTAAAGGAATTA 1878 Query 1645 AATGATACGGAAACAACTGCGAGAAGTTGCGAAGTAGCGATTTCCAACATCCTTGTGGAG 1704 |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 1879 AATGATACTGAAACAACTGCAAGAAGTTGCGAAGTAGCGATTGCCAACATCCTTGTGGAG 1938 Query 1705 GCAACCCATTTAAAGACTGCCCTTGGCATCTCTATACCCATTAGCTGGTCGGCGGAATCA 1764 ||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct 1939 GCAACCCATTTGAAGACTGCCCTTGGGATCTCCATACCAATTAGCTGGTCGGCGGAATCA 1998 Query 1765 GATATGGAATCAGTTACTGATGGCGAATCGAGCTGTGAAAGGACGGATTCTGTTTCTGCT 1824 || || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1999 GACATTGAATCAGTTACTGATGGCGAGTCGAGCTGTGAAAGGACCGATTCTGTTTCTGCT 2058 Query 1825 GCAGGATTTGAGATGGTGGAGCTTGTTATTCTAGCAGCCGAGATAATGAAAGAACAACAC 1884 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2059 GCAGGATTTGAGATGGTGGAGCTTGTTATTCTAGCAGCCGAGATAATGAAAGAACAACAC 2118 Query 1885 CATTGA 1890 |||||| Sbjct 2119 CATTGA 2124 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93573815880 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5