BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906209

Length=168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53610.1 | Symbols: ATRAB8, AtRab8B, AtRABE1a, RAB8 | RAB GT...   255    6e-68


> AT3G53610.1 | Symbols: ATRAB8, AtRab8B, AtRABE1a, RAB8 | RAB 
GTPase homolog 8 | chr3:19876232-19878519 REVERSE LENGTH=1082
Length=1082

 Score =  255 bits (138),  Expect = 6e-68
 Identities = 144/147 (98%), Gaps = 0/147 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTGCTCCTCCTGCTAGAGCTCGTGCTGATTACGATTTCCTCATTAAACTTCTGCTG  60
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  133  ATGGCTGCTCCTCCTGCTAGAGCTCGTGCTGATTACGATTACCTCATTAAACTTCTGCTG  192

Query  61   ATCGGAGACAGCGGTGTTGGTAAGAATTGCCTCCTCTTACGTTTCTCAGATGGCTCGTTT  120
            ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  193  ATCGGAGACAGCGGTGTTGGTAAGAGTTGCCTTCTCTTACGTTTCTCAGATGGCTCGTTT  252

Query  121  ACCACCAGTTTCATTACAACTATTGGG  147
            |||||||||||||||||||||||||||
Sbjct  253  ACCACCAGTTTCATTACAACTATTGGG  279



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7293695895


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5