BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg906209 Length=168 Score E Sequences producing significant alignments: (Bits) Value AT3G53610.1 | Symbols: ATRAB8, AtRab8B, AtRABE1a, RAB8 | RAB GT... 255 6e-68 > AT3G53610.1 | Symbols: ATRAB8, AtRab8B, AtRABE1a, RAB8 | RAB GTPase homolog 8 | chr3:19876232-19878519 REVERSE LENGTH=1082 Length=1082 Score = 255 bits (138), Expect = 6e-68 Identities = 144/147 (98%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 1 ATGGCTGCTCCTCCTGCTAGAGCTCGTGCTGATTACGATTTCCTCATTAAACTTCTGCTG 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 133 ATGGCTGCTCCTCCTGCTAGAGCTCGTGCTGATTACGATTACCTCATTAAACTTCTGCTG 192 Query 61 ATCGGAGACAGCGGTGTTGGTAAGAATTGCCTCCTCTTACGTTTCTCAGATGGCTCGTTT 120 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 193 ATCGGAGACAGCGGTGTTGGTAAGAGTTGCCTTCTCTTACGTTTCTCAGATGGCTCGTTT 252 Query 121 ACCACCAGTTTCATTACAACTATTGGG 147 ||||||||||||||||||||||||||| Sbjct 253 ACCACCAGTTTCATTACAACTATTGGG 279 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7293695895 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5