BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906219

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like super...   270    1e-71
  AT3G18810.1 | Symbols:  | Protein kinase superfamily protein | ...   113    2e-24
  AT3G51060.1 | Symbols: STY1, SRS1 | Lateral root primordium (LR...  95.3    6e-19


> AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superfamily 
protein | chr2:7808871-7810795 REVERSE LENGTH=1232
Length=1232

 Score =  270 bits (146),  Expect = 1e-71
 Identities = 180/197 (91%), Gaps = 0/197 (0%)
 Strand=Plus/Plus

Query  11   ATCATCACTACTCATTTTCGCCTTGCAACTTCTTCCATAGACCAAAGCCTATCTTTGGTC  70
            ||||||| ||||||| | | |||| |||||||||| ||||| |||||||| | |||||||
Sbjct  765  ATCATCATTACTCATCTGCACCTTACAACTTCTTCGATAGAGCAAAGCCTCTGTTTGGTC  824

Query  71   TAGAAGGTCGTCAAGAAGAAGAAGAATGTGGTGTCAATGCTTATCTGGAACATCGATGTA  130
            ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct  825  TAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTGGAACATCGACGTA  884

Query  131  AGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACCTCAACGGTGGTAGTGGTGATATCT  190
             |||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||
Sbjct  885  CGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGTAGTGGTGCCATCT  944

Query  191  GGAAGTATGGCCAATCG  207
            |||||||||||||||||
Sbjct  945  GGAAGTATGGCCAATCG  961


> AT3G18810.1 | Symbols:  | Protein kinase superfamily protein 
| chr3:6480701-6483593 REVERSE LENGTH=2103
Length=2103

 Score =  113 bits (61),  Expect = 2e-24
 Identities = 132/164 (80%), Gaps = 14/164 (9%)
 Strand=Plus/Plus

Query  493   AGCTCGCACTATGACTCGGGCACTTACAGTGCTGATGTTAAGAAGTTCAGGAAATTGGTC  552
             |||||| ||||||||||  ||||||||||||| ||| | ||||||||||||||| ||| |
Sbjct  1903  AGCTCGGACTATGACTCAAGCACTTACAGTGCGGATATGAAGAAGTTCAGGAAAGTGG-C  1961

Query  553   -TTGGATAACCATAAAGCAGCGAGTACGGAAACACGACAGAGTACCGAAACACGACCGAT  611
              |||||||  |||  || | || ||  | || || | | |||||| | ||||||| ||| 
Sbjct  1962  ATTGGATAGTCAT-GAGTA-CG-GT--GCAAGCA-G-C-GAGTACGGGAACACGAGCGAA  2013

Query  612   TACAGGC-T---CCGTCTTCCTCGAGCAGCGAGGAGATTCGTAG  651
             ||| ||| |   ||||||||||||||||||||||||||||||||
Sbjct  2014  TACGGGCTTGACCCGTCTTCCTCGAGCAGCGAGGAGATTCGTAG  2057


> AT3G51060.1 | Symbols: STY1, SRS1 | Lateral root primordium (LRP) 
protein-related | chr3:18964344-18966405 FORWARD LENGTH=1650
Length=1650

 Score = 95.3 bits (51),  Expect = 6e-19
 Identities = 57/60 (95%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  263   CGGCCCTGGAAGTAGTTGTGGCGGGGGCTACAACGTTGTTGCCGCCGGTGAGAGCTCCTC  322
             ||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1111  CGGTCCTGGAAGTAGTGGTGGCGGAGGCTACAACGTTGTTGCCGCCGGTGAGAGCTCCTC  1170



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31446576022


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5