BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906228
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 449 7e-126
> AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2540284-2542136
REVERSE LENGTH=1247
Length=1247
Score = 449 bits (243), Expect = 7e-126
Identities = 304/334 (91%), Gaps = 2/334 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCTTGGTGTGTCGAGTGACATGTTTGATATCAAGAAGAACGCTTTGAAGAACCTG 60
|||||||||||||||| ||||||||||||||||||| | ||||| ||||||||||| |||
Sbjct 348 ATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGCTTTGAAGAAGCTG 407
Query 61 TCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAAGGAAATGGTAGCT 120
| || |||||||||| | |||||||||||||||||||| |||||||||||||||||||||
Sbjct 408 TTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAAGGAAATGGTAGCT 467
Query 121 GTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTATACCAAGAT-ACGTAC 179
|||||||||||||||||||||||||||||||||||||||||||| || ||| | | ||||
Sbjct 468 GTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACACGAAGCTGA-GTAC 526
Query 180 CGAGTCACTTGTACAGTTCTTTTGCTCTAAGGAAGATTCCAGTGATGCTGGAGATTGTGG 239
|| ||||||| ||||||||| | || ||||||||||||| | ||||||||||||||| ||
Sbjct 527 CGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATGCTGGAGATTGCGG 586
Query 240 TGGCATCCCTGTATTTAATTTTTGGAATGTCTCTACATTTGAGAAGATGGCTGAGGAGTT 299
|||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 587 TGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTGAGAAGATGGCTGAGGAGCT 646
Query 300 TGTGGAGATGTTCATACGCCAAGTAATGATAAAG 333
|||||||||||||| |||| |||||||| |||||
Sbjct 647 TGTGGAGATGTTCAAACGCGAAGTAATGCTAAAG 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17643979899
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5