BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906260
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15260.1 | Symbols: | RING/U-box superfamily protein | chr2... 556 8e-158
> AT2G15260.1 | Symbols: | RING/U-box superfamily protein | chr2:6630528-6634008
FORWARD LENGTH=1089
Length=1089
Score = 556 bits (301), Expect = 8e-158
Identities = 445/513 (87%), Gaps = 15/513 (3%)
Strand=Plus/Plus
Query 286 TGTATCGGCTCAGCATATAATGCAAAGGGCTTCATGGAATGTCCAAACTGTAGGAATATA 345
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 457 TGTATCGGCTCAGCCTATAATGCAAAGGGCTTCATGGAATGTCCAAACTGTAGAAATATA 516
Query 346 GAACCAGGTGAATGGCAGTTTGCAGACGGCACCCATTTCAATGCCGATAATATGATTGCT 405
||||| ||| | ||||||||| ||||||| || || |||||| || || ||||||||||
Sbjct 517 GAACCGGGTCATTGGCAGTTTTCAGACGGTACTCACTTCAATCCCAATGGTATGATTGCT 576
Query 406 AATGATGATGAACAAGAAGAAGACAATGATCCTGGATGCTTCTCTCA-ATTGATTGTAAA 464
||| |||| ||| |||||||||||||||||||||||| ||| ||||| || |||||||||
Sbjct 577 AATAATGAAGAAGAAGAAGAAGACAATGATCCTGGATCCTTTTCTCAGAT-GATTGTAAA 635
Query 465 ATCGGAGGTGTGCCCTTTTGGATGCTTAGGTCAACGATATCCCTTTC-TC--TTAGGAAG 521
||| |||||||||||||||||||||||||||||||| ||||| ||| || ||||||||
Sbjct 636 ATCAGAGGTGTGCCCTTTTGGATGCTTAGGTCAACGGTATCCTTTTGATCCCTTAGGAAG 695
Query 522 ATCCGGCATCTCAATGGTTAATGCACCAATGGCTTTGTCATATGCAAGCAGC-AGCACAA 580
||||| |||||||||| |||||||||||||| |||||||| | |||||| | |||||
Sbjct 696 ATCCGACATCTCAATGATTAATGCACCAATGAATTTGTCATGTCCAAGCA-CTAGCACGG 754
Query 581 CGCAACTTAACCCATCTAACGTATGGGAGAGTACTCAGCCTTTCTTGTCGTTGAGGCATC 640
|||||||||||||||| |||||||||||||||||||||||||| |||| | ||||||||
Sbjct 755 TGCAACTTAACCCATCTGACGTATGGGAGAGTACTCAGCCTTTCCTGTCATCGAGGCATC 814
Query 641 AT-TGCATGGTCGAACATGA-ATTATACCGCATGATTTATGGTGACCGAAACGAAATGGG 698
| | |||||||||| |||| || ||||||||||||||| |||||| ||| ||||||||
Sbjct 815 ACCT-CATGGTCGAAGATGAGAT-ATACCGCATGATTTACGGTGACAGAATTGAAATGGG 872
Query 699 AGAA-GTAAGCGGCAACCATGGAGGCAGCAGAA-GAAATAGAAACAATGGTGACGGAGGA 756
|||| | ||| ||||||||| ||||||| |||| | ||| |||| || | ||||||||
Sbjct 873 AGAAAG-AAGTGGCAACCATAGAGGCAG-AGAAAGCAATGGAAATGGTGATAACGGAGGA 930
Query 757 AGCGGCAACTTTGGTGGAAATGGCAACGGCAAT 789
||| ||| ||||||||| |||||||||||||||
Sbjct 931 AGCAGCACCTTTGGTGGCAATGGCAACGGCAAT 963
Score = 274 bits (148), Expect = 9e-73
Identities = 192/213 (90%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 12 CAATGTTAATGAAGG-AACAAAATTCGCTTTTGACCTCAACCTTGAACCTGTTGATGAAA 70
||||||||||||||| || || ||| |||||||| |||||| | ||||||||||||||||
Sbjct 93 CAATGTTAATGAAGGCAA-AAGATTTGCTTTTGATCTCAACGTGGAACCTGTTGATGAAA 151
Query 71 CTTTGGACATCAACGTTGATCATGTTGATGAAGAGAATCGTGATGCTCTGAATCCTGTTG 130
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 152 CTTTGGACCTCAACGTTGAACCTGTTGATGAAGAGAATCGTGATGCTCTGAATCCTGTTG 211
Query 131 ATGAAGAGAATCATAACTCTATGAATCATGTTGATGAAGAGAATCATGATTCT-CTAAAC 189
|||||||||||||| |||||||||||||||||| | || |||||||||||||| |||| |
Sbjct 212 ATGAAGAGAATCATGACTCTATGAATCATGTTGCTAAACAGAATCATGATTCTTCTAATC 271
Query 190 CCTATTGATGAAGAGATTCGTGATTCTCCGAAT 222
| ||||| |||||||||||||||||| ||||
Sbjct 272 A-TGTTGATCAAGAGATTCGTGATTCTCAGAAT 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5