BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906268
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34200.1 | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenas... 1543 0.0
AT3G19480.1 | Symbols: | D-3-phosphoglycerate dehydrogenase | ... 1033 0.0
> AT4G34200.1 | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase
| chr4:16373819-16376622 REVERSE LENGTH=2095
Length=2095
Score = 1543 bits (835), Expect = 0.0
Identities = 1393/1664 (84%), Gaps = 32/1664 (2%)
Strand=Plus/Plus
Query 162 TACCGGAGACGGAGCTAAACCAACCG-TTCTCGTAGCGGAGAAGCTCGGAGAAGCTGG-A 219
||| ||||||||| |||| || | || ||||||| |||||||||||||| || ||||| |
Sbjct 226 TACTGGAGACGGATCTAAGCCTA-CGATTCTCGTGGCGGAGAAGCTCGGTGACGCTGGTA 284
Query 220 GTTCAGCTACTT-GAGAAAT-TCGCAAACGTCGATTGTTCTTATAACTTGACTCCAGAGG 277
|| |||| || ||| || |||| || ||||| ||||| |||||| ||||||| ||||
Sbjct 285 -TTAAGCT-TTTGGAG-GATGTCGCGAATGTCGACTGTTCGTATAACATGACTCCTGAGG 341
Query 278 AGCTAAACACGAAGATCTCACTATGTGATGCGTTGATTGTGAGAAGTGCGACGAAGGTAG 337
|||| |||| |||||||| || ||||| || ||||| ||||| |||| ||| ||||| |
Sbjct 342 AGCTCAACATTAAGATCTCGCTCTGTGACGCCTTGATCGTGAGGAGTGGGACTAAGGTTG 401
Query 338 GTCGTGATGTGTTTGAATCGTCTCGTGGACGGCTTAAGGTTGTTGGAAGAGCTGGTGTTG 397
| ||||| ||||| |||||||||| |||||||| ||||||||||| | ||||||||||
Sbjct 402 GCCGTGAGGTGTTCGAATCGTCTCACGGACGGCTCAAGGTTGTTGGTCGCGCTGGTGTTG 461
Query 398 GGATTGATAACGTAGATCTAAGTGCTGCGACGGAGTTTGGTTGTTTGGTTGTTAATGCTC 457
|||| || ||||| ||||| ||||| |||||||||||||| ||||||||||| || ||||
Sbjct 462 GGATCGACAACGTGGATCTGAGTGCAGCGACGGAGTTTGGGTGTTTGGTTGTCAACGCTC 521
Query 458 CGACTGCGAATACTATCGCCGCCGCTGAACATGGGATTGCACTTATGGCTGCTATGGCTA 517
|||| ||||| || ||||| |||||||| || || || || |||||||| || |||||||
Sbjct 522 CGACGGCGAACACGATCGCTGCCGCTGAGCACGGAATCGCTCTTATGGCCGCCATGGCTA 581
Query 518 GAAATGTTTCTCAAGCTGATGCTTCTGTTAAAGCTGGAGAATGGAAAAGGAATAAGTATG 577
| || || ||||||||||||| |||||||| |||||||| ||||| ||||| |||||||
Sbjct 582 GGAACGTAGCTCAAGCTGATGCGTCTGTTAAGGCTGGAGAGTGGAAGAGGAACAAGTATG 641
Query 578 TTGGTGTATCACTAGTGGGGAAGA-CATTAGCTGTGATGGGATTTGGGAAAGTT-GGATC 635
| ||||| ||||| ||||| |||| | || || ||| ||||||| ||||||||| ||| |
Sbjct 642 TAGGTGTTTCACTTGTGGGAAAGACCCTT-GCAGTGTTGGGATTCGGGAAAGTTGGGA-C 699
Query 636 TGAAGTTGCTCGACGAGCTAAAGGACTTGGTATGCGTGTTATTGCTCATGATCCTTATGC 695
||||||||||| || ||||| || |||||||||||||| |||||||||||||| |||||
Sbjct 700 GGAAGTTGCTCGTCGTGCTAAGGGTCTTGGTATGCGTGTCATTGCTCATGATCCCTATGC 759
Query 696 GCCTGCGGATCGTGCTCATGCTATTGGTGTGGATTTAGTGAGCTTTGATGAAGCGCTTTC 755
|| || || ||||| || || |||||||| || |||||||||||||||||||| ||| |
Sbjct 760 CCCAGCAGACCGTGCACACGCCATTGGTGTTGACTTAGTGAGCTTTGATGAAGCCCTTGC 819
Query 756 GACTGCTGATTTCATTTCT-TTACATATGCCTCTTACACCTGCTACTTCGAAGATGCTTA 814
|| || |||||||||||| || |||||||||||||| || | || |||||||| || |
Sbjct 820 CACCGCGGATTTCATTTCTCTT-CATATGCCTCTTACGCCAACAACATCGAAGATACTAA 878
Query 815 ACGATGAAACGTTTGCGAAGATGAAGAAAGGG-GTGAGGATTGTTAATGTTGCTCGTGGA 873
|||| ||||| ||||| || |||||| ||||| || | |||||||||||||||||||||
Sbjct 879 ACGACGAAACCTTTGCCAAAATGAAG-AAGGGAGTTCGAATTGTTAATGTTGCTCGTGGA 937
Query 874 GGTGTTATTGATGAAGATGCGTTGGTTAGAGCTTTAGATGGTGGTATTGTTGCTCAGGCT 933
||||| || || ||||||||||| || |||||| | |||| |||||||||||| ||||||
Sbjct 938 GGTGTCATAGACGAAGATGCGTTAGTGAGAGCTCTGGATGCTGGTATTGTTGCGCAGGCT 997
Query 934 GCTCTTGATGTTTTTACTAAAGAGCCGCCGGCTAAGGATAGTAAGTTGGTGCAGCATGAG 993
|| ||||||||||| || |||||||| |||||||| ||||| ||| | |||||||| |||
Sbjct 998 GCACTTGATGTTTTCACCAAAGAGCCTCCGGCTAAAGATAGCAAGCTCGTGCAGCACGAG 1057
Query 994 AGGGTTACAGTTACACCTCATCTTGGAGCAAGTACTATGGAGGCTCAGGAAGGAGTAGCT 1053
||||| || || ||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 1058 AGGGTCACTGTGACACCTCATCTTGGAGCTAGTACCATGGAGGCTCAGGAAGGAGTTGCC 1117
Query 1054 ATTGAGATTGCAGAAGCTGTTGTTGGAGCTCTTAATGGAGAGCTTGCTTCTACTGCTGTA 1113
|| || ||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 1118 ATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGAATGGAGAGCTTGCTGCTACTGCAGTC 1177
Query 1114 AATGCACCTATGGTTTCTGCTGAGGTTCTCG-CGGAGCTGAAACCATATGTGGTGTTGGC 1172
||||||||||||||||||||||||||||| | | ||||||||||||||||||||| | ||
Sbjct 1178 AATGCACCTATGGTTTCTGCTGAGGTTCT-GACCGAGCTGAAACCATATGTGGTGCTAGC 1236
Query 1173 GGAGCAATTGGGGAGACTGGCTGTCCAATTGGTGGCTGGAGGAAGCGGTGTGAAGAACGT 1232
||| || | || |||||||| || ||| ||||||| ||||||||||||||||| ||||
Sbjct 1237 CGAGAAACTAGGAAGACTGGCAGTGCAACTGGTGGCCGGAGGAAGCGGTGTGAAAAACGC 1296
Query 1233 GAAAGTGACCTACGCTTCGGCTCGAGCCACTGACGATCTTGACACTAGACTTCTCAGAGC 1292
|||| | || ||||| || || |||||||||| ||||||||||| ||||||||| ||||
Sbjct 1297 GAAAATCACATACGCCTCAGCAAGAGCCACTGATGATCTTGACACCAGACTTCTCCGAGC 1356
Query 1293 CATGATTACGAAGGGTATCATTGAGCCAATCTCCGACGTGTATGTAAACCTTG-TCAACG 1351
|||||| || ||||| ||||| ||||||||||| ||||| ||||| || ||| ||||||
Sbjct 1357 CATGATCACCAAGGGAATCATCGAGCCAATCTCTGACGTATATGTCAAT-TTGGTCAACG 1415
Query 1352 CGGATTACACAGCAAAACAGAGAGGTATGAGAATCTCAGAGGAACGGGGTGTCCTT-G-A 1409
| |||| |||||| || ||||||||| | ||| ||||||||||||| | || | || | |
Sbjct 1416 CTGATTTCACAGCCAAGCAGAGAGGTCTCAGACTCTCAGAGGAACGTG-TG-CTTTTGGA 1473
Query 1410 CGGTTCACCAGAGAGCCCACTCGAGACCATCACGGTTCAGCTAGGCAACGTAGAGTCCAA 1469
|||||||||||||||||| | ||||| || || ||||||||| |||| || ||||||||
Sbjct 1474 TGGTTCACCAGAGAGCCCATTGGAGACAATAACTGTTCAGCTAAGCAATGTGGAGTCCAA 1533
Query 1470 ATTCGCCAGCGCCTTATCTGAATCTGGAGAAGTCAAAGTTGAAGGAAGAG-TTAAAGATG 1528
||||||||| || | |||||||| ||||| || ||||| ||||||| || ||||||| |
Sbjct 1534 ATTCGCCAGTTCCCTGTCTGAATCAGGAGAGGTTAAAGTGGAAGGAA-AGGTTAAAGACG 1592
Query 1529 GGGTTCCC-CATTTGACAAAGGTGGGTTCTTTTGAAGTAGATGTGAGTCTTGAAGGAAGT 1587
| || ||| |||||||||||||| || |||||||| || ||||| | ||||||||| |||
Sbjct 1593 GAGT-CCCGCATTTGACAAAGGTTGGATCTTTTGAGGTCGATGTAACTCTTGAAGGTAGT 1651
Query 1588 ATAATACTGTGTAGGCAAGTAGATCAACCGGGCATGATCGGGACTGTCGGAAGAATC-TT 1646
|| |||||||| ||||| || |||||||| || |||||||||||||||||||| ||| ||
Sbjct 1652 ATCATACTGTGCAGGCAGGTGGATCAACCTGGTATGATCGGGACTGTCGGAAGCATCCTT 1711
Query 1647 GGGAGAGTCAAATGTTAATGTCAGTTTCATGAGTGTTGGAAGAATCGCGCCGAGGAAGCA 1706
|| |||||| ||||| ||||| | |||||||| ||||| ||||| || |||||||||||
Sbjct 1712 GG-AGAGTCTAATGTCAATGTTAACTTCATGAGCGTTGGGAGAATTGCACCGAGGAAGCA 1770
Query 1707 AGC-AGTTATGGCAATTGGTGTTGATGACATGCCGAGCAAAGACACTCTGAAGAAAATCG 1765
||| | ||||||| ||||| || |||||||| || |||||||| || |||||||| || |
Sbjct 1771 AGCGA-TTATGGCGATTGGAGTAGATGACATACCAAGCAAAGAGACACTGAAGAAGATTG 1829
Query 1766 GTGAAATTCCGGCCGTGGAGGAGTTTGTGTTCCTCAAGCTATAG 1809
| |||||||| || || |||||||| || ||||||||||| |||
Sbjct 1830 GGGAAATTCCAGCGGTTGAGGAGTTCGTTTTCCTCAAGCTCTAG 1873
> AT3G19480.1 | Symbols: | D-3-phosphoglycerate dehydrogenase
| chr3:6752531-6754785 FORWARD LENGTH=1961
Length=1961
Score = 1033 bits (559), Expect = 0.0
Identities = 1353/1725 (78%), Gaps = 100/1725 (6%)
Strand=Plus/Plus
Query 135 ACGGCTTATCCTCGTGACGTGC-ACTGCTACCGGAGACGGAGCTAAACCAACCG-TTCTC 192
|||| | |||||||| |||| | || || |||||| |||| ||||| | || |||||
Sbjct 152 ACGGATCATCCTCGTTACGT-CTTCTTCTTCCGGAGGTGGAGGAAAACCGA-CGATTCTC 209
Query 193 GTAGCGGAGAAGCTCGGAGAAGCTGGAGTTC-AGCTACTTGAGAAATTCGCAAACGTCGA 251
||| |||||||||| || |||| || | || | || ||| |||| | ||| || || ||
Sbjct 210 GTAACGGAGAAGCTAGGCCAAGC-GGGGATCGATCTGCTTAAGAAGTACGCTAATGTGGA 268
Query 252 TTGTTCTTAT-AACTTGACTC-CAGAGGAGCTAAACACGAAGATCTCACTATGTGATGCG 309
||| |||||| | | ||| || | |||||||| ||||||||||| || |||||||||
Sbjct 269 TTGCTCTTATGATC-TGAGTCTC-GAGGAGCTTTGTACGAAGATCTCTCTTTGTGATGCG 326
Query 310 TTGATTGTGAGAAGTGCG-ACGAAGGTAGGTCGTGATGTGTTTGAATCGTCTCGT-GGAC 367
| || || || |||| | || ||||| || | ||||||||||||||||| ||| |||
Sbjct 327 CTCATCGTCAGGAGTG-GTACCAAGGTTGGGAGAGATGTGTTTGAATCGTCGCGTGGGA- 384
Query 368 GGCTTAAGGTTGTTGGAAGAGCTGGTGTTGGGATTGATAACGTAGATCTAAG-TGCTGCG 426
||||||||||||||||| | ||||||||||||||||||||||| ||| | | || |||
Sbjct 385 GGCTTAAGGTTGTTGGACGCGCTGGTGTTGGGATTGATAACGTCGAT-TTGGCGGCGGCG 443
Query 427 ACGGAGTTTGGTTGTTTGGTTGTTAATGCTCCGACTGCGAATACTATCGCCGCCGCTGAA 486
|| |||| ||| ||||||||||||||||||||||||||||| ||| | || || ||||||
Sbjct 444 ACTGAGTATGGGTGTTTGGTTGTTAATGCTCCGACTGCGAACACTGTGGCTGCTGCTGAA 503
Query 487 CATGGGATTGCACTTATGGCTGCTATGGCTAGAAATGTTTCTCAAGCTGATGCTTCTGTT 546
|| || ||||| ||| || | || ||||||||||| || ||||||||||||||||| |
Sbjct 504 CACGGAATTGCGCTTTTGACCGCCATGGCTAGAAACATTGCTCAAGCTGATGCTTCTATC 563
Query 547 AAAGCTGG-AGAATGGAAAAGGAATAAGTATGTTGGTGTATCACTAGTGGGGAAGACA-T 604
|||||||| | |||||| || || |||||||| ||||| ||||| ||||||||||| |
Sbjct 564 AAAGCTGGCA-AATGGACGAGAAACAAGTATGTAGGTGTTTCACTTGTGGGGAAGACTCT 622
Query 605 TAGCTGTGATGGGATTTGGGAAAGTTGGATCTGAAGTTGCTCGACGAGCTAAAGGACTTG 664
| ||||| | || ||||| ||||||||||| || |||||| ||||||| | |||||||
Sbjct 623 T-GCTGTTCTTGGTTTTGGTAAAGTTGGATCAGAGGTTGCTAGACGAGCCAGGGGACTTG 681
Query 665 GTATGCGTGTTATTGCTCATGATCCTTATGCGCCTGCGGATCGTGCTC-ATGCTATTGGT 723
|||||| ||| ||| | |||||||||||||| || ||||||||||| | | |||||||||
Sbjct 682 GTATGCATGTCATTACACATGATCCTTATGCACCAGCGGATCGTGCACGA-GCTATTGGT 740
Query 724 GTGGAT-TTAGTGAGCTTTGATGAAGCGCTTTCGACTGCTGATTTCATTTCTTTACATAT 782
||||| || || || ||||| | ||| |||| |||||||| ||||| ||||| ||| |
Sbjct 741 GTGGAGCTT-GTTAGTTTTGAAGTAGCTATTTCAACTGCTGACTTCATCTCTTTGCATCT 799
Query 783 GCCTCTTACACCTGCTACTTCGAAGATGCTTAACGATGAAACGTTTGCGAAGATGAAGAA 842
||||||||| ||||||||||||||||| | || |||| || ||||||| |||||||||
Sbjct 800 GCCTCTTACTGCTGCTACTTCGAAGATGATGAATGATGTGACCTTTGCGATGATGAAGAA 859
Query 843 AGGGGTGAGGATTGTTAATGTTGCTCGTGGAGGTGTTATTGATGAAGATGCG-TTGGTT- 900
||| || | |||||||||||||||||||| || ||||||||||| || || || ||
Sbjct 860 AGGAGTCCGTATTGTTAATGTTGCTCGTGGTGGAGTTATTGATGAGGAAGCTCTT--TTG 917
Query 901 AGAGCT-TTAGA-TGGTGGTATTGTTGCTCAGGCTGCTCTTGATGTTTTTACTAA-AGAG 957
||||| || || | | ||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 918 AGAGCGCTT-GACTCG-GGTATTGTTGCTCAGGCAGCTCTTGATGTTTTTAC-AGTAGAG 974
Query 958 CCGCCGGCTAAGGATAGTAAGTTGGTGC-AGCATGAGAGGGTTACAGTTACACCTCATCT 1016
|| || | ||| |||| |||||||||| | |||||||| || || | |||||||||||
Sbjct 975 CCACCTGTTAAAGATAATAAGTTGGTGTTA-CATGAGAGTGTCACTGCCACACCTCATCT 1033
Query 1017 TGGAGCAAGTACTATGGAGGCTCAGGAAGGAGTAG-CTATTGAGATT-GCAGAAGCTGTT 1074
||| || |||||||||||||||||||||||||| | |||| || | | ||||||||||||
Sbjct 1034 TGGTGCTAGTACTATGGAGGCTCAGGAAGGAGT-GTCTATCGA-AGTCGCAGAAGCTGTT 1091
Query 1075 GTTGGAGCTCTT-A-ATGGAGAGCTTGCTTCTACTGCTGTAAATGCACCTATGGTTTCTG 1132
|||||||| || | | ||||| |||||| |||| || || |||||||| |||||| |
Sbjct 1092 ATTGGAGCT-TTGAGA-GGAGAACTTGCTGCTACCGCGGTCAATGCACCAATGGTTCCA- 1148
Query 1133 CT-GAGGT-TCTCGCGG-AGCTGAAACCATATGTGGTG-TTGGCGGAGCAA--TTGGGGA 1186
|| ||||| | | | || ||||||| || ||||| || ||| | ||| || ||||| |
Sbjct 1149 CTAGAGGTAT-T-GAGGGAGCTGAAGCCGTATGTTGTACTTG-CTGAG-AAGCTTGGG-A 1203
Query 1187 GACTGGCTGTCCAATTGGTGGCTGGAGGAAGCGGTGTGAA-GAACGTGAAAGTGACCTAC 1245
| |||||||| |||||||| |||| |||||||||||||| | ||||||||||| ||
Sbjct 1204 GGCTGGCTGTACAATTGGTAACTGGTGGAAGCGGTGTGAATGCT-GTGAAAGTGACTTAT 1262
Query 1246 GCTTCGGCTC-GAGC-CACTGACGATCTTGACACTAGACTTCTCAGAGCCATGATTACGA 1303
||||| | | |||| | |||| ||||| ||||||||||||||| |||||||| | | |
Sbjct 1263 GCTTCTTC-CAGAGCTC-CTGATGATCTCGACACTAGACTTCTCCGAGCCATGGTCATAA 1320
Query 1304 AGGGTATCATTGAGCCAATCTCCGACGTGTATG--TAAACCTTGTCAACGCGGATTACAC 1361
|||| ||||| || || || ||| | | |||| |||| || || ||| | ||||| |
Sbjct 1321 AGGGGATCATCGAACCCATTTCC-A-GCGTATTCATAAATCTGGTTAACTCCGATTATAT 1378
Query 1362 AGCAAAACAGA-GAGGTA-TGAGAATCTCAGAGGAACGG--GGTGTCCTTGACGGTTCAC 1417
|| ||||| | | || | | | ||||||||| ||||| ||| || | ||||| ||||
Sbjct 1379 TGCCAAACA-ACGTGG-AGTCAAAATCTCAGAAGAACGTATGGT-TC-TAGACGGCTCAC 1434
Query 1418 CAGAGAGCCCACTCGAG-ACCATCACGGTTCAGCTAGGCAA-CGTAGAGTCCAA-ATTCG 1474
| |||| ||| | || || || || |||| | ||| ||| ||| || || || ||| |
Sbjct 1435 CTGAGAATCCAATTGAATAC-ATAACTGTTCGGATAG-CAAACGTGGAATC-AAGATTTG 1491
Query 1475 CCAGCGCCTTATCTGAATCTGGAGA-AGTCAAAGTTGAAGGAAGAGTTAAAGATGGGGTT 1533
||||||| ||||| || || || || | ||||||| ||||| ||||| ||| | ||||||
Sbjct 1492 CCAGCGCTTTATCAGAGTCCGGTGAGA-TCAAAGTAGAAGGCAGAGTGAAACAAGGGGTT 1550
Query 1534 CCCCA-T-TTGAC-AAAGGTGGG-TTCTTTTGAAGTAGATGTGAGTCTT-GAAGGAAGTA 1588
|| | | || || |||| | || || ||| || || ||||||||| || ||||| |||
Sbjct 1551 CCA-AGTCTT-ACCAAAG-TCGGATTATTTGGA-GTGGATGTGAGT-TTAGAAGGGAGTG 1605
Query 1589 TAATACTGTGTAGGCAAGTAGATCAACC-GGGCATGATCGGGACTGTCGGAAGAATCTTG 1647
| || ||||| |||||||||||||| || ||| |||||||| | || | || |||||
Sbjct 1606 TGATTCTGTGCAGGCAAGTAGATCAGCCTGGG-ATGATCGGTAAAGTTGCTAGCATCTTA 1664
Query 1648 GGAGAGTCAAAT-GTTAATGTCAGTTTCATGAGTGTTGGAAGAATCGCGCCGAGG-AAGC 1705
||||| | ||| || || || || |||||||| || || ||||||| || ||| ||||
Sbjct 1665 GGAGA-TGAAAACGTCAACGTGAGCTTCATGAGCGTCGGTCGAATCGCTCC-AGGCAAGC 1722
Query 1706 AAGCAGTTATGGCAATTGGTGTTGATGA-CATGCCGAGCAAAGACACTCTGAAGAAAATC 1764
|||| || ||||||||||| || ||||| || || |||||||| ||| |||||||||||
Sbjct 1723 AAGCTGTGATGGCAATTGGAGTAGATGAACAA-CCAAGCAAAGAAACTTTGAAGAAAATC 1781
Query 1765 GGTGAAATTCCGGCCGTGGAGGAGTTTGTGTTCCTCAAGCTATAG 1809
|| || ||||| ||| | || |||||||| |||||||| ||||||
Sbjct 1782 GGAGACATTCCTGCCATTGAAGAGTTTGTTTTCCTCAAACTATAG 1826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89507571735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5