BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906300

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G10980.1 | Symbols:  | transposable element gene | chr2:4336...   191    2e-48
  AT4G04293.1 | Symbols:  | transposable element gene | chr4:2076...   115    1e-25


> AT2G10980.1 | Symbols:  | transposable element gene | chr2:4336273-4337467 
FORWARD LENGTH=813
Length=813

 Score =  191 bits (103),  Expect = 2e-48
 Identities = 117/124 (94%), Gaps = 0/124 (0%)
 Strand=Plus/Plus

Query  1    ATGGATCCATTAGAATATCCTTTTGATATCAAAGCTTACAAGAGGCAGTCTGAAATGGAA  60
            |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  1    ATGGATCCATCAGAATATCCTTTTGACATCAAAGCTTACAAGAGGCAGTCTGAAATTGAA  60

Query  61   GAGAGGTATATCATCAACCGGTTTAGGGAGCATCGAAACAAAATAGAGGAAGACTATCCA  120
            |||| |||||||||||| ||||||||||||| |||||||||||||| |||||||||||||
Sbjct  61   GAGATGTATATCATCAATCGGTTTAGGGAGCGTCGAAACAAAATAGGGGAAGACTATCCA  120

Query  121  CCTC  124
            ||||
Sbjct  121  CCTC  124


> AT4G04293.1 | Symbols:  | transposable element gene | chr4:2076832-2077361 
FORWARD LENGTH=530
Length=530

 Score =  115 bits (62),  Expect = 1e-25
 Identities = 135/170 (79%), Gaps = 5/170 (3%)
 Strand=Plus/Plus

Query  1    ATGGATCCATTAGAATATCCTTTTGATATCAAAGCTTACAAGAGGCAGTCTGAAATGGAA  60
            |||||||||| ||||| ||| || |||||| |||||||||| || || | | | ||  ||
Sbjct  25   ATGGATCCATCAGAATTTCCCTTCGATATCGAAGCTTACAAAAGACAATTTCATATCAAA  84

Query  61   GAGAGGTATATCATCAACCGGTTTAGGGAGCATCG-AAACAAAATAGAGGAAGACTATCC  119
            |||||||||||||||||||||||||| |||| ||  ||| ||||| || ||||| |||||
Sbjct  85   GAGAGGTATATCATCAACCGGTTTAGAGAGCGTCACAAA-AAAATTGAAGAAGATTATCC  143

Query  120  ACCTCGTAGCAAGAGAAAA-ATACTTCAAAAGAGATCATGCACCAGCAAA  168
            || ||| |  || |||| | ||| | ||| || ||||||| | || ||||
Sbjct  144  ACGTCGCAATAAAAGAACATATA-T-CAAGAGGGATCATGTAGCACCAAA  191



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8048216160


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5