BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg906300 Length=183 Score E Sequences producing significant alignments: (Bits) Value AT2G10980.1 | Symbols: | transposable element gene | chr2:4336... 191 2e-48 AT4G04293.1 | Symbols: | transposable element gene | chr4:2076... 115 1e-25 > AT2G10980.1 | Symbols: | transposable element gene | chr2:4336273-4337467 FORWARD LENGTH=813 Length=813 Score = 191 bits (103), Expect = 2e-48 Identities = 117/124 (94%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 1 ATGGATCCATTAGAATATCCTTTTGATATCAAAGCTTACAAGAGGCAGTCTGAAATGGAA 60 |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGATCCATCAGAATATCCTTTTGACATCAAAGCTTACAAGAGGCAGTCTGAAATTGAA 60 Query 61 GAGAGGTATATCATCAACCGGTTTAGGGAGCATCGAAACAAAATAGAGGAAGACTATCCA 120 |||| |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| Sbjct 61 GAGATGTATATCATCAATCGGTTTAGGGAGCGTCGAAACAAAATAGGGGAAGACTATCCA 120 Query 121 CCTC 124 |||| Sbjct 121 CCTC 124 > AT4G04293.1 | Symbols: | transposable element gene | chr4:2076832-2077361 FORWARD LENGTH=530 Length=530 Score = 115 bits (62), Expect = 1e-25 Identities = 135/170 (79%), Gaps = 5/170 (3%) Strand=Plus/Plus Query 1 ATGGATCCATTAGAATATCCTTTTGATATCAAAGCTTACAAGAGGCAGTCTGAAATGGAA 60 |||||||||| ||||| ||| || |||||| |||||||||| || || | | | || || Sbjct 25 ATGGATCCATCAGAATTTCCCTTCGATATCGAAGCTTACAAAAGACAATTTCATATCAAA 84 Query 61 GAGAGGTATATCATCAACCGGTTTAGGGAGCATCG-AAACAAAATAGAGGAAGACTATCC 119 |||||||||||||||||||||||||| |||| || ||| ||||| || ||||| ||||| Sbjct 85 GAGAGGTATATCATCAACCGGTTTAGAGAGCGTCACAAA-AAAATTGAAGAAGATTATCC 143 Query 120 ACCTCGTAGCAAGAGAAAA-ATACTTCAAAAGAGATCATGCACCAGCAAA 168 || ||| | || |||| | ||| | ||| || ||||||| | || |||| Sbjct 144 ACGTCGCAATAAAAGAACATATA-T-CAAGAGGGATCATGTAGCACCAAA 191 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8048216160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5