BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906307

Length=720
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46915.1 | Symbols:  | transcriptional factor B3 family prot...   115    5e-25


> AT5G46915.1 | Symbols:  | transcriptional factor B3 family protein 
| chr5:19051568-19053200 REVERSE LENGTH=867
Length=867

 Score =  115 bits (62),  Expect = 5e-25
 Identities = 98/114 (86%), Gaps = 8/114 (7%)
 Strand=Plus/Plus

Query  274  GATGGGAAGGAGATGATGCAACCTCCACAATCC-AGTTCCTTCTTGGCTTCTTCAAGCCG  332
            |||||||||||||||||||||||||||||| || ||  |||||||||| |||||||| ||
Sbjct  283  GATGGGAAGGAGATGATGCAACCTCCACAA-CCTAGAGCCTTCTTGGCATCTTCAAGTCG  341

Query  333  TGGTA-----T-CAAAACAGAACAAAGGGAAGATGACAAGAAGGAAGAGGTGGT  380
            |  ||     | || |||||||||| ||||||||||||||||||||||||||||
Sbjct  342  TATTAGAAGATTCAGAACAGAACAAGGGGAAGATGACAAGAAGGAAGAGGTGGT  395



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34912732165


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5