BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906318

Length=2223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45150.1 | Symbols: RTL3 | RNAse THREE-like protein 3 | chr5...  71.3    4e-11


> AT5G45150.1 | Symbols: RTL3 | RNAse THREE-like protein 3 | chr5:18260441-18264346 
FORWARD LENGTH=2874
Length=2874

 Score = 71.3 bits (38),  Expect = 4e-11
 Identities = 125/165 (76%), Gaps = 14/165 (8%)
 Strand=Plus/Plus

Query  1961  TTGTTTCTTCAGTTACGATTGAGACT-CCAACTGA-AGAAGGTACCTTAT-ACATCGAGG  2017
             |||||| |||||||| |||||||| | |||| | | |||||||||||| | ||||  | |
Sbjct  2609  TTGTTTGTTCAGTTAAGATTGAGA-TACCAAAT-ATAGAAGGTACCTT-TCACATAAAAG  2665

Query  2018  GTGATTTGGAAAA--AGGGAAAGAGAAAGCAGAATACAACGCAGCCT-CTCACGTGATAA  2074
             | |||  | ||||  |  |||| || |||||||| ||  | |||||  | ||| ||||||
Sbjct  2666  GAGAT--GCAAAACCAACGAAAAAGGAAGCAGAAAACTCCTCAGCCGAC-CACATGATAA  2722

Query  2075  GAACTCT-GAAATCTTCTCCATTGGGTCTTGTCGTAAGGAATCTG  2118
             || | || | ||||||||  | || |||||||| ||| |||||||
Sbjct  2723  GAGC-CTTGGAATCTTCTGTAATGAGTCTTGTCATAACGAATCTG  2766



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 110290597365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5