BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906319

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16100.1 | Symbols:  | Protein of unknown function (DUF789) ...   366    9e-101
  AT5G20040.3 | Symbols: IPT9 | isopentenyltransferase 9 | chr5:6...   121    8e-27 


> AT4G16100.1 | Symbols:  | Protein of unknown function (DUF789) 
| chr4:9105720-9108159 FORWARD LENGTH=1447
Length=1447

 Score =  366 bits (198),  Expect = 9e-101
 Identities = 237/256 (93%), Gaps = 2/256 (1%)
 Strand=Plus/Plus

Query  111   GGTCAATCGTTACAAAACCTCGATGCTTGCTTTTTACCATTCCACTCTTTATCAACACCC  170
             |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||
Sbjct  963   GGTCAATCGTTACAAAACCTCGATGCTTGCTTTTTAACATTCCACTCGTTGTCAACACCC  1022

Query  171   TGTCGAGGTACAAGCAATTAGGAAGGTCAAAGCTCAAGCAAATCAGTTGTACCGTCGAAG  230
             |||||||||||||||||| ||||||||||||||||||||||||| |||| | || |||||
Sbjct  1023  TGTCGAGGTACAAGCAATGAGGAAGGTCAAAGCTCAAGCAAATCGGTTGCATCGGCGAAG  1082

Query  231   CTTCCATTGCCCACTTTCGGTCTCGCATCCTACAAGTTTAAATTTTCAGTATGGAGCCCA  290
             |||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct  1083  CTTCCATTGCCCACTTTCGGTCTCGCATCCTACAAGTTTAAACTGTCAGAATGGAGCCCA  1142

Query  291   GAGAGTGACATGGACGAGAACCAGAGAGAGTCGGGACGCTGTTACGAACGGCTCAAGAGT  350
             ||||||||| | ||||||||||||||||  ||||||||||| ||||||| ||| ||||||
Sbjct  1143  GAGAGTGACGTAGACGAGAACCAGAGAG--TCGGGACGCTGCTACGAACAGCTGAAGAGT  1200

Query  351   GGCTCAGGCCGTTGAA  366
             ||||||||| ||||||
Sbjct  1201  GGCTCAGGCGGTTGAA  1216


> AT5G20040.3 | Symbols: IPT9 | isopentenyltransferase 9 | chr5:6767802-6771190 
REVERSE LENGTH=1757
Length=1757

 Score =  121 bits (65),  Expect = 8e-27
 Identities = 92/104 (88%), Gaps = 5/104 (5%)
 Strand=Plus/Minus

Query  369  AGACTTTCTCTTCTTCG-TCCCGTTCAGAGGAACAGAGGAAG-C--GGCGGCTCCGCAGA  424
            ||||||| ||||||| | |||||||||||||||||||| | | |  || |||| ||||||
Sbjct  351  AGACTTTTTCTTCTT-GTTCCCGTTCAGAGGAACAGAGCAGGCCGTGGTGGCTGCGCAGA  293

Query  425  ATCTCCGGCGCAGTACAAGGCTTGGCGGTTGCAGCCTCAAGTAA  468
            ||||||||||||||||||||||||||||||| || |||||||||
Sbjct  292  ATCTCCGGCGCAGTACAAGGCTTGGCGGTTGAAGTCTCAAGTAA  249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5