BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906331
Length=2223
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15880.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 3110 0.0
AT4G33970.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 894 0.0
> AT2G15880.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr2:6918039-6920319 REVERSE LENGTH=2184
Length=2184
Score = 3110 bits (1684), Expect = 0.0
Identities = 2057/2230 (92%), Gaps = 53/2230 (2%)
Strand=Plus/Plus
Query 1 ATGCCCCATATCTATAAGCAGCCCTTGGGTATTGTCCAAGGTTTTGTTCTAACACTCACC 60
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1 ATGCCCCATATCTATAAGCAGCCCTTGGGTATTTTCCAAGGTTTTGTTCCAACACTCACC 60
Query 61 GATGCAGAAGCTTCATTTATTGCACAACGACAGCTCTTGACGTTACCTGAAAATGGCGAA 120
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 61 GATGCAGAAGTTTCATTTATTGCACAGCGACAGCTCTTGACGTTACCTGAAAATGGTGAA 120
Query 121 CTTCCTGATGATATTGAGTATGAGGTTGATCTTAAGGTGACATTTGCCAACCATAGGCTT 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CTTCCTGATGATATTGAGTATGAGGTTGATCTTAAGGTGACATTTGCAAACCATAGGCTT 180
Query 181 AAGAGAGCGTATATTGCTCTCCAAGCCTGGAAAAAGGCGGTGTATTCAGACCCGTTTAAT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGAGAGCGTATATTGCTCTCCAAGCCTGGAAAAAGGCGGTGTATTCAGACCCGTTTAAC 240
Query 241 ACCACGGGAAACTGGCATGGCCCTCATGTGTGTGGCTACACGGGCGTGTTCTGCGCCCCA 300
||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 241 ACCACAGGAAACTGGCATGGCCCTCATGTGTGTGGCTATACGGGTGTGTTCTGTGCCCCG 300
Query 301 GCTCTTGATGATCCTAACGTTGCGGTTGTGGCGGGGGTTGATTTGAATGGTGCGGATATT 360
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTCTTGATGATCCTGACGTCGCGGTTGTGGCGGGGGTTGATTTGAATGGTGCGGATATC 360
Query 361 GCAGGGCATTTACCGGCTGAACTTGGTTTGATGACAGATGTTGCAATGTTTCATTTGAAT 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GCAGGGCATTTACCGGCTGAACTTGGTTTGATGACAGATGTTGCGATGTTTCATTTGAAT 420
Query 421 TCGAACCGGTTCTGTGGTATCATACCTAAAAGTTTCGAGAAGTTGAGTCTAATGCACGAG 480
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 421 TCAAACCGGTTCTGTGGTATCATACCTAAGAGTTTCGAGAAGTTGAGCCTAATGCACGAG 480
Query 481 TTCGATGTCAGCAACAACCGGTTTGTTGGACCTTTCCCTTCCGTAGTCCTCTCATGGCCG 540
|| ||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||
Sbjct 481 TTTGATGTCAGCAACAACCGGTTTGTCGGACCTTTCCCTTCTGTTGTCCTCTCGTGGCCG 540
Query 541 GCCGTTAAGTTCATCGACCTTAGATACAATGATTTCGAAGGTCAAGTCCCTCCTGAGCTT 600
|| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTGTTAAGTTCATTGACGTCAGATACAATGATTTCGAAGGTCAAGTCCCTCCTGAGCTT 600
Query 601 TTCAAGAAGGATCTCGATGCCATTTTCTTGAACAACAACAGATTCACGTCTACCATTCCT 660
||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 TTCAAAAAGGATCTCGACGCCATTTTCCTGAACAACAACAGATTCACGTCTACCATTCCT 660
Query 661 GATTCTCTCGGAGAATCCTCAGCCTCCGTCGTGACCTTTGCTCACAACAAATTCAGCGGT 720
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 661 GATTCCCTCGGAGAATCATCAGCCTCCGTTGTGACCTTTGCTCACAACAAATTTAGCGGT 720
Query 721 TGTATCCCTAGAAGTATTGGAAACATGAAGAATCTCAACGAGATTATCTTTAAGGACAAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTATCCCTAGAAGTATTGGAAACATGAAGAATCTCAACGAGATTATCTTTAAGGACAAC 780
Query 781 AGTCTTGGCGGTTGTTTCCCATCAGAGATCGGGAAGCTATCCAATGTGAACGTGTTTGAC 840
|||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 781 AGTCTTGGCGGTTGTTTCCCGTCAGAGATTGGGAAGCTAGCCAATGTGAACGTGTTTGAC 840
Query 841 GCTAGCATGAACTCCTTCACCGGTGTTCTACCTCCAAGCTTTGTCGGGCTTACCAGTCTA 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 841 GCTAGCATGAACTCCTTCACTGGTGTTCTACCTCCAAGCTTTGTCGGGCTTACCAGTATG 900
Query 901 GAAGAGTTTGATATCTCTGGGAATAAACTCACTGGGTTCATGCCAGAGAATATCTGCAAG 960
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 901 GAAGAGTTTGATATCTCTGGGAATAAACTCACCGGGTTCATACCAGAGAATATATGCAAG 960
Query 961 TTGCCTAAATTAGTTAACTTGACGTACGCCTACAATTACTTCAACGGGCAGGGTGATTCA 1020
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 961 TTGCCTAAATTGGTTAACTTGACGTACGCCTACAATTACTTCAACGGACAAGGTGATTCA 1020
Query 1021 TGTGTCCCAGGTAGTCAGAAGGAGATTGCATTGGATGATACACGCAACTGCTTGCCAGAT 1080
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGTGTTCCAGGTAGTCAGAAGCAGATTGCATTGGATGATACACGCAACTGCTTGCCAGAT 1080
Query 1081 CGACCTAAGCAACGATCAGCCAAGGAATGTGCGGTTGTGATTAGCCGTCCAGTCGATTGT 1140
|| |||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1081 CGGCCTAAGCAACGATCGGCCAAGGAATGTGCTGTGGTGATTAGCCGTCCAGTTGATTGT 1140
Query 1141 AGTAAGGACAAGTGTGCTGGTGGTTCTAGCTACGTTACACCGTCGAAGTCTCCATCACCT 1200
|||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 1141 AGTAAGGACAAGTGTGCTGGTGGTTCTAGCCAAGCTACACCGTCGAAGTCTCCATCACCT 1200
Query 1201 GTGCCAACTAGGCCAGTTCATAAACCACAACCACCGAAAGAATCACCACAACCAAATGAC 1260
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1201 GTGCCAACTAGGCCAGTTCATAAACCACAACCACCAAAAGAATCACCACAACCAAATGAC 1260
Query 1261 CCATATAATCAGTCTCCAGTGAAGTTTCGGCGTAGCCCGCCTCCACCACAACAACTACAT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1261 CCATATAATCAGTCTCCAGTGAAGTTTCGGCGTAGCCCGCCTCCACCACAACAACCACAT 1320
Query 1321 CACCCTGTGGTTCACTCTCCACCGCCTACACCGCCAGTTTTATCTCCTCCTCCCTCACCG 1380
|||| ||||||||||||||||||||| | || || ||||||||| |||||||
Sbjct 1321 CACCATGTGGTTCACTCTCCACCGCC-A----GC---TTCG-TCTCCTCCTACCTCACCA 1371
Query 1381 CCGGTCCATTCAACTCCATCACCGGTTCATAAACCTCAACCACCGAAAGAGTCGCCGCAA 1440
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1372 CCAGTCCATTCAACTCCATCACCGGTTCACAAACCACAACCACCGAAAGAGTCACCGCAA 1431
Query 1441 CCAAATGACCCATATGATCAGTCACCTGTGAAGTTCCGGCGTAGtccacctccacctccg 1500
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 CCAAATGATCCATATGATCAGTCACCTGTGAAGTTCCGGCGTAGTCCACCTCCACCTCCT 1491
Query 1501 gttcactctcccccacctccatcgcc-agttcactcaccaccaccaccaccaccagtata 1559
|||||||||||||||||||| || || | ||||||||||||||||||||||| |||||
Sbjct 1492 GTTCACTCTCCCCCACCTCCGTCACCTA-TTCACTCACCACCACCACCACCA---GTATA 1547
Query 1560 ttctccaccgcccccaccaccagtctattcaccacc------accaccggtttattctcc 1613
|||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1548 TTCTCCACCGCCCCCACCACCAGTATATTCTCCACCGCCCCCACCACCGGTTTATTCTCC 1607
Query 1614 accgccaccaccaccagtgcactctcctccaccgccaGTACATTCTCCTCCACCGCCAGT 1673
||| |||||||| || ||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1608 ACCACCACCACCTCCGGTGCATTCACCTCCACCGCCAGTACACTCTCCTCCACCGCCAGT 1667
Query 1674 CCATTCACCACCACCACCGGTACACTCTCCTCCCCCGccagtccattcaccaccacctcc 1733
||||| |||||||| | | | |||||||||||| || || ||
Sbjct 1668 GCATTCTCCACCACC---G---C-C--------------AGTCCATTCACCGCCCCCACC 1706
Query 1734 agtccattctccaccgccaccagtctattcacctccaccaccagtttattctccaccgcc 1793
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1707 GGTACATTCTCCACCGCCACCAGTCCATTCACCTCCACCACCAGTTTATTCTCCACCGCC 1766
Query 1794 accaccaccagtccattcaccaccaccGCCCGTACATTCtcctcctccgccagtccattc 1853
||| || | || ||||| || |||||||| || ||||| || || || |||||||| ||
Sbjct 1767 ACCGCC-C--GTACATTCTCCTCCACCGCCAGTCCATTCACCACCGCCTCCAGTCCACTC 1823
Query 1854 accacccccaccagtccattctcctccaccgccaccaccgccagtccattcaccacctcc 1913
|| || ||||||||| ||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1824 TCCTCCACCACCAGTCTATTCTCC---ACCGCCACCACCGCCGGTCCATTCACCACCTCC 1880
Query 1914 accggtatactctccaccaccacctgtccactcccctccaccacctgtatattccccacc 1973
||| || | ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1881 ACCAGTGTTCTCTCCACCACCACCTGTCCACTCCCCTCCACCGCCAGTATATTCCCCACC 1940
Query 1974 accaccagtacattctcctccaccgccgccagtaaactcacctccaccaccaccaccacc 2033
|||||||||| ||||||| || |||||||||||||| ||||| |||||||||||||
Sbjct 1941 ACCACCAGTATATTCTCCACCTCCGCCGCCAGTAAAGTCACC---ACCACCACCACCA-- 1995
Query 2034 aGTCTACTCTCCTCCACATTTACCGCCAAAAATGAGTTCACCACCAACACAAACACCGGT 2093
|||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1996 -GTCTACTCTCCTCCACTTTTACCACCAAAGATGAGTTCACCACCAACACAAACACCGGT 2054
Query 2094 CAACTCTCCTCCACCACAAACACCAACACGGACAGTAGAAGCACCACCGCCAAGTGAGGA 2153
||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 2055 CAACTCTCCTCCACCACGAACACCCTCACAGACAGTAGAAGCACCACCGCCAAGTGAGGA 2114
Query 2154 ATTCATCATTCCACCATTCATCGGCCACCAATATGCTTCACCACCACCTCCAATGTTCCA 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2115 ATTCATCATTCCACCATTCATCGGCCACCAATATGCTTCACCACCACCTCCAATGTTCCA 2174
Query 2214 AGGCTACTAA 2223
||||||||||
Sbjct 2175 AGGCTACTAA 2184
Score = 165 bits (89), Expect = 2e-39
Identities = 219/278 (79%), Gaps = 23/278 (8%)
Strand=Plus/Plus
Query 1621 ccaccaccagtgca--ct-ctcctccaccgccaGTACATTCTCCTCCACCGCCAGTCCAT 1677
||||||||||| | || | || |||||||| |||||||||||||||||||||||||||
Sbjct 1741 CCACCACCAGTTTATTCTCCACCGCCACCGCCCGTACATTCTCCTCCACCGCCAGTCCAT 1800
Query 1678 TCACCACCACCACCGGTACACTCTCCTCCCCCGccagtccattc---acc---accacct 1731
|||||||| || || || ||||||||||| || |||||| |||| ||| ||||||
Sbjct 1801 TCACCACCGCCTCCAGTCCACTCTCCTCCACCACCAGTCTATTCTCCACCGCCACCACCG 1860
Query 1732 ccagtccattctccaccgccaccagtctat-tcacctccaccaccagtttattctccacc 1790
|| |||||||| ||||| |||||||| | | || || |||||||| || | |||| ||
Sbjct 1861 CCGGTCCATTCACCACCTCCACCAGTGT-TCTCTCCACCACCACCTGTCCA--CTCC-CC 1916
Query 1791 gccaccaccaccagtccattcaccaccaccGCCCGTACATTCtcctcctccgcc---agt 1847
||||| ||| | | |||| |||||||| || ||| ||||||| |||||||| |||
Sbjct 1917 TCCACCGCCAGTA-T--ATTCCCCACCACCACCAGTATATTCTCCACCTCCGCCGCCAGT 1973
Query 1848 ccattcaccacc-cc-c-accagtccattctcctccac 1882
| |||||||| || | ||||||| | ||||||||||
Sbjct 1974 AAAGTCACCACCACCACCACCAGTCTACTCTCCTCCAC 2011
> AT4G33970.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr4:16279795-16281894 REVERSE LENGTH=2100
Length=2100
Score = 894 bits (484), Expect = 0.0
Identities = 924/1133 (82%), Gaps = 43/1133 (4%)
Strand=Plus/Plus
Query 58 ACCGATGCAGAAGCTTCATTTATTGCACAACGACAGCTCTTGACGTTACCTGAAAATGGC 117
|||||| |||||||| | || |||| || ||||| || || |||||||| || || |||
Sbjct 136 ACCGATACAGAAGCTGCCTTCATTGTGCAGCGACAACTTTTAACGTTACCAGACAACGGC 195
Query 118 GAACTTCCTGATGATATTGAGTATGAGGTTGATCTTAAGG-TGACATTTGCCAACCA-TA 175
||||||||||||||||| || || ||||||||||| |||| | || |||||||| || |
Sbjct 196 GAACTTCCTGATGATATCGAATACGAGGTTGATCTCAAGGCT-ACCTTTGCCAA-CACCA 253
Query 176 GGCTTAAGAGAGCGTATATTGCTCTCCAAGCCTGGAAAAAGGCGGTGTATTCAGACCCGT 235
||||||||||||| ||||| ||||| || || ||||||||||| | | ||||||||| |
Sbjct 254 GGCTTAAGAGAGCTTATATAGCTCTTCAGGCTTGGAAAAAGGCCATATTTTCAGACCCAT 313
Query 236 TTAATACCACGGGAAACTGGCATGGCCCTCATGTGTGTGGCTACACGGGCGT-GTTCTGC 294
|||| |||||||| |||||||||||||| || ||||| |||||||| || || ||| ||
Sbjct 314 TTAACACCACGGGGAACTGGCATGGCCCACACGTGTGCGGCTACACCGGTGTGGTT-TGT 372
Query 295 GCCCCAGCTCTTGATGA-TCCTAACGTTGCGGTTGTGGCGGGGGTTGATTTGAATGGTGC 353
|| |||||||||||||| ||| | || ||||||| || || ||||| | || |||||
Sbjct 373 GCGCCAGCTCTTGATGATTCC-GATGTCACGGTTGTAGCTGGTGTTGACCTCAACGGTGC 431
Query 354 GGATATTGCAGGGCATTTACCGGCTGAACTTGGTTTGATGACAGATGTTGCAATGTTTCA 413
|||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 432 GGATATCGCAGGGCATTTGCCTGCTGAGCTTGGTTTGATGACAGATGTTGCAATGTTCCA 491
Query 414 TTTGAATTCGAACCGGTTCTGTGGTATCATACCTAAAAG-TTTCGAGAAG-TTGAGTCTA 471
||||||||| |||||||| ||||| |||||||||||||| ||| |||||| | || |||
Sbjct 492 TTTGAATTCAAACCGGTTTTGTGGGATCATACCTAAAAGCTTT-GAGAAGCTAAAG-CTA 549
Query 472 ATGCACGAGTTCGATGTCAGCAACAACCGGTTT-GTTGGACCTTTCCCTTCCGTAGTCCT 530
|||||||| |||||||| || ||||||| |||| ||||||||||||||| ||| || ||
Sbjct 550 ATGCACGAATTCGATGTTAGTAACAACC-GTTTCGTTGGACCTTTCCCTAACGTCGTTCT 608
Query 531 CTCATGGCCGGCCGTTAAGTTCATCGACCTTAGATACAATGATTTCGAAGGTCAAGTCCC 590
||| ||||| | || || | | |||||||||| | ||| ||||||||||||||||||||
Sbjct 609 CTCTTGGCCTGATGTCAAATACTTCGACCTTAGGTTCAACGATTTCGAAGGTCAAGTCCC 668
Query 591 TCCTGAGCTTTTCAAGAAGGATCTCGATGCCATTTTCTTGAACAACAACAGATTCACGTC 650
|||||||||||||||||| || || || ||||||||||||||| |||| |||||||| ||
Sbjct 669 TCCTGAGCTTTTCAAGAAAGAACTTGACGCCATTTTCTTGAACGACAATAGATTCACCTC 728
Query 651 TACCATTCCTGATTCTCTCGGAGAATCCTCAG-CCTCCGTCGTGACCTTTGCTCACAACA 709
|||||||| ||||| || ||||| || | |||| || ||||| |||||| |||| |
Sbjct 729 GGTGATTCCTGAATCTCTAGGGGAATC-TCCGGCCTCGGTTGTGACTTTTGCTAACAATA 787
Query 710 AATTCAGCGGTTGTATCCCTA-GAAGTATTGGAAACATGAAGAATCTCAACGAGATTATC 768
|||||| ||| |||||||||| || |||| ||||||||||||||||||||||||||| ||
Sbjct 788 AATTCACCGGATGTATCCCTAAGA-GTATCGGAAACATGAAGAATCTCAACGAGATTGTC 846
Query 769 TTTAAGGACAAC-AGTCTT-GGCGGTTGTTTCCCATCAGAGATCGGGAAGCTATCCAATG 826
|||| |||||| | | || || |||||||||||||| || ||||| ||| |||| ||||
Sbjct 847 TTTATGGACAATGA-T-TTAGGAGGTTGTTTCCCATCTGAAATCGGAAAGTTATCGAATG 904
Query 827 TGAACGTGTTT--GACGCTAGCATGAACTCCTTCACCGGT-GTTCTACCTCCAAGCTTTG 883
| |||| |||| || || |||| |||||| |||| ||| || || || | |||||||
Sbjct 905 T-AACG-GTTTTCGATGCAAGCAAGAACTCGTTCATAGGTCGT-CTCCCGACTAGCTTTG 961
Query 884 TCGGGCTTACC-AGTC-TAGAAGAGTTTGATATCTCTGGGAATAAACTCACTGGG-TTCA 940
||||| ||| | || | | || || |||||||||| ||||| |||||||| || ||
Sbjct 962 TCGGG-TTAACGAG-CGTGGAGGAAATTGATATCTCCGGGAACAAACTCACCGGACTTG- 1018
Query 941 TGCCAG-AGAATATCTGCAAGTTGCCTAAATTAGTTAACTTGACGTACGCCTACAATTAC 999
| || | | || || ||| |||||||||| || || |||||||| || | |||||||||
Sbjct 1019 TACC-GCATAACATTTGCCAGTTGCCTAATTTGGTGAACTTGACTTATTCTTACAATTAC 1077
Query 1000 TTCAACGGGCAGGGTGATTCATGTGTCCCAGGT---AGTCAG-AAGGAGATTGCATTGGA 1055
|||| || || || | ||| ||||| |||||| |||| | ||||||||||| |||||
Sbjct 1078 TTCAGTGGACAAGGAGGTTCTTGTGTTCCAGGTGGTAGTC-GCAAGGAGATTGCGTTGGA 1136
Query 1056 TGATACACGCAACTGCTTGCCAGATCGACCTAAGCAACGATCAGCC-AAGGAATGTGCGG 1114
||| |||||||| |||||| | ||||||| |||||||||| ||| ||| |||||||||
Sbjct 1137 TGACACACGCAATTGCTTGGCTTCTCGACCTGAGCAACGATCCGCCCAAG-AATGTGCGG 1195
Query 1115 TTGTGATTAGCCGTCCAGTCGATTGTAGTAAGGACAAGTGTGCTGGTGGTTCT 1167
||||||| | ||| || || |||||||| ||||||||||| |||||||| |||
Sbjct 1196 TTGTGATCAACCGCCCGGTTGATTGTAGCAAGGACAAGTGCGCTGGTGGCTCT 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110290597365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5