BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906333
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translatio... 387 4e-107
> AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808150-1809853 FORWARD LENGTH=1057
Length=1057
Score = 387 bits (209), Expect = 4e-107
Identities = 235/247 (95%), Gaps = 3/247 (1%)
Strand=Plus/Plus
Query 11 CTGTCCGTGTGACTAATTTGTCTGAAGATACCCGTGGA-CAGGATTTGATGGAGTTGTTT 69
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 639 CTGTCCGTGTGACTAATTTGTCTGAAGATACCCGTGGACCA-GATTTGATGGAGTTGTTT 697
Query 70 TGTCCGTTTGGTTCTGTAACCCGTTGTCATGTAGCCATTGACCAGAAGACGAGCATGAGC 129
||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 698 CGTCCGTTTGGTGCTGTAACCCGTTGTCATGTAGCCATTGATCAGAAGACAAGCATGAGC 757
Query 130 AGAGGATTTGGATTCGTCAATTTTGTGAGCAGGGAAGATGCACAGCGAGCAATCAACACA 189
||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 758 AGAGGATTTGGTTTTGTCAGTTTTGTGAGCAGGGAAGATGCACAGCGAGCAATCAACAAA 817
Query 190 TTGAATGGCTATGGTTATGATAACCTCATTCTTAGGGTTGAATGGGCCACTCCTAAA-CC 248
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 818 TTGAATGGCTATGGTTATGATAACCTCATTCTTAGGGTTGAATGGTCCACTCCTAAAACC 877
Query 249 CAATTAG 255
|||||||
Sbjct 878 CAATTAG 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11611850019
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5