BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906345
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20250.1 | Symbols: | unknown protein; Has 10 Blast hits to... 2534 0.0
> AT2G20250.1 | Symbols: | unknown protein; Has 10 Blast hits
to 10 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 2; Plants - 8; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:8733750-8736577 REVERSE LENGTH=2185
Length=2185
Score = 2534 bits (1372), Expect = 0.0
Identities = 1622/1740 (93%), Gaps = 27/1740 (2%)
Strand=Plus/Plus
Query 1 ATGAGAAGAAGGAATCAGCGAACGAAAGCTGACGAAACCCCAAAGAAGACCGATCCACAA 60
||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 162 ATGAGAAGAAGGAATCAGCGAACGAAAGCTGGCGAAACCCTAAATAAGACCGATCCACAA 221
Query 61 ATCGGATTCAAGTTTACTGATCCTTGGAGCTCTCGAGCAAATTCAGATTTGAAACGCAGG 120
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 222 ATCGGATTCAAGTTTACTGATCCTTCGAGCGCTCGAGCAAATTCAGATTTGAAACGCAGG 281
Query 121 AGAAGGGTGAGTTTCGACGATGTTGATCATCGGAGTCCCTTGAACGAATCTCAGGCCGGA 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 282 AGAAGGGTGAGTTTCGACGATGCTGATCATCGGAGTCCCTTGAACGAATCTCAGGCCGGA 341
Query 181 GGATCGATTGATGCCAAGACCTCGGAGTTTGCGTTCTTTAAGAAGCAAAAGTCTGGTTTT 240
||||||||||||||||||||||| |||||||| |||||||||||| ||||||| ||||
Sbjct 342 GGATCGATTGATGCCAAGACCTCTGAGTTTGCATTCTTTAAGAAGTTAAAGTCTAATTTT 401
Query 241 GGTCACTGCTCTGAATCTTCTGATTCTAAACAATCAAATAAAGTTCAGA-AAATTCCTAA 299
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 402 GGTCACTGCTCTGAATCTTCTGATTCTAAACCATCAAATAAAGTTCA-ACAAATTCCTAA 460
Query 300 AACCTTCGAATCCAGAGCCAAACCAGTA-GAA-CA--TGCAGGAACGGACTGCGACGATA 355
|||||||||||||||||||||||||| | || | |||||||||||||||||||||||
Sbjct 461 AACCTTCGAATCCAGAGCCAAACCAG-ACAAAGGATGTGCAGGAACGGACTGCGACGATA 519
Query 356 ATGGTAGATCCAAGAGCTATAGCTTCTCCACACCCATTCATAGTGCCAGACGTGGGTCGT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 ATGGTAGATCCAAGAGCTATAGCTTCTCCACACCCATTCATAGTGCCAGACGTGGGTCGT 579
Query 416 CTATGTCACATGTCAACTTGACTCAGAGGGATAGAGGAAGA-GATAATGGGAAATCTTCT 474
|||||| ||||| |||||||||||| ||||||||||||| | | |||||||| |||||||
Sbjct 580 CTATGTTACATGCCAACTTGACTCAAAGGGATAGAGGAAAATG-TAATGGGAGATCTTCT 638
Query 475 TCATCATTCAGTGGAGATAAGG-ACACAATTCCAAGTGGTAACAACCTGAGATCTGGAAG 533
|||||||||||| |||||| || ||||| ||||||||||| |||| |||||||||| |||
Sbjct 639 TCATCATTCAGTAGAGATA-GGTACACAGTTCCAAGTGGTGACAATCTGAGATCTGAAAG 697
Query 534 TGGAGGAATCAGTGAAGAGAAAGGAGATATATTCTCTGTGAAGAGAAAGAAACTGCATCA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TGGAGGAATCAGTGAAGAGAAAGGAGATATATTCTCTGTGAAGAGAAAGAAACTGCATCA 757
Query 594 TTTGGTCAAAGATACATGGTTTTCTGAAATCCCTGAGCTTACCTCAAACGGGCATGATTT 653
| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 758 GTGGGTCAAAGATACATGGCTTACTGAAATCCCTGAGCTTACCTCAAACGGGCATGATTT 817
Query 654 AGTTTCTATACTCCTAACTCGGCTGTTCCCTAGTACGGAGGAGACACAGCCTTCTAGGTT 713
||||||| | |||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 818 AGTTTCTGTTCTCCTAACTCGGCTGTCCCCTGGTACGGAGGAGACACAGCCTTCTAGGTT 877
Query 714 TTCCAAGGAGAGGACGGATAGAGTTAAAAGAAGAACGTTTGTTGATTCTCCTGGCTCAAA 773
||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 878 TTCCAAGGAGACGACGGCCAGAGTCAAAAGAAGAACGTTTGTTGAATCTCCTGGCTCAAA 937
Query 774 GTTTCTCAAGAGGTCTCATGAAAGCTATACAGAAGTTGACCACAGTCTGCAAATGGATAG 833
|||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 938 GTTTCTTAAGAGGTCCCATGAAAGCTATGCAGAAGTTGACCACAGTCTGCATATGGAAAG 997
Query 834 GGACAGATTGATCTCTTGGCAGGGATGGCTGGAAAATAACATTACCCCGAGGCTGCAGTA 893
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 GGAGAGATTGATATCTTGGCAGGGATGGCTGGAAAATAACATTACCCCGAGGCTGCAGTA 1057
Query 894 TCCAACAGGTCATGTTCAGAGCACTTTCATCCCAAGAGATCCCGAAGAGATTAGCTTTCC 953
||| || | |||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1058 TCCT-CA---C--GTTCAGAGCAGTTTCATCCCAAGAGATTCCGAAGAGATTAGCTTTCC 1111
Query 954 CATCTTATATCCTAAGGAATCGGTTTATAAACCTCTACTGTTGAAACAGAAGGCGTGTC- 1012
||||||||||||||||||||| |||||| ||||| ||||||||||||||||| || ||
Sbjct 1112 CATCTTATATCCTAAGGAATCAGTTTATCGACCTCCACTGTTGAAACAGAAGGAGT-TCC 1170
Query 1013 TGTCGCTTCCTGTTGAAGAAAATTTTGACTGTTCTCCCATATCTAGCCTCCATTTTAGAA 1072
||||| ||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 1171 TGTCGTTTCCTGTTGAAGAAAATTTGGAGTGTTCTCCCATATCTAGCCTCCATTTCAGAA 1230
Query 1073 ACTACAAGCCTCTTTCAATGGATTATCACAGAGGAGAAACTGGATACAGCTCAGAGGACT 1132
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1231 ACTACAAGCCTTTTTCAATGGATTATCACAGAGGAGAAATTGGATACAGCACAGAGGACT 1290
Query 1133 TATCACACGAACATAGAGAGCCTTCATCGGCATTACTTCTCGAGTGGAATACTGAAACCG 1192
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1291 TATCACACGAACATAGAGAGCCTTCATCTGCATTACTTCTCGAGTGGAATACTGAAACCG 1350
Query 1193 CAAGCACCAGAAAGACAGATGATTTTCCACTTAGTTATCGCACAAGACTCATCACGTATC 1252
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1351 CAAGCACCAGAAAGACAGATGATTTTCCACTTAGTTATCACACAAGACTCATCACGTATC 1410
Query 1253 CAACTGCATCATCCTCATCTTTGACAGATAATCCATGGAACTCTGACTTTTCTTCATCCC 1312
||| |||||||||||||||||||||||| ||||||||| |||||||| |||||||||||
Sbjct 1411 CAAATGCATCATCCTCATCTTTGACAGACAATCCATGGTGCTCTGACTATTCTTCATCCC 1470
Query 1313 ATGATTTGGTTACGAAAG-AGCTGTACCCTTTACCTCTGCTCTCTCATTACACTTCAGGC 1371
||||||||||||| || | |||||||||||||||||||||||||||||| || |||||||
Sbjct 1471 ATGATTTGGTTAC-AAGGGAGCTGTACCCTTTACCTCTGCTCTCTCATTCCATTTCAGGC 1529
Query 1372 AGTTTCCTCTTACCAGCAACGAACCATGCCAGCCATTTTGAGCATGATGAACTCGAGAGG 1431
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1530 AGTTTCCTCTTACCAACAACGAACCAAGCCAGCCATTTTGAGCATGATGAACTCGAGAGG 1589
Query 1432 TATATTATTGGTGACGAAGACGTGGTTGCTGCAAACCA-GAATCTCCACACATCTCACCG 1490
|||||||||| ||||||||||||||||||||||||||| || ||||| |||| ||| |
Sbjct 1590 TATATTATTGATGACGAAGACGTGGTTGCTGCAAACCAAGAG-CTCCAGACATTTCATCA 1648
Query 1491 CACAAATAGCTCAGATTGTTTAACAAGAGACTACATAAACTATCATAATCTTTCAAACTC 1550
|||||| ||||||||||||||||| ||||| |||| | | |||| |||||||||||||||
Sbjct 1649 CACAAACAGCTCAGATTGTTTAACCAGAGATTACACATATTATCGTAATCTTTCAAACTC 1708
Query 1551 TCCT-GTGGATCATTGTCCTTTTAAAGTCCCTGGATGTGAAATAGTATCCTTTCCATTTT 1609
|| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1709 TC-TAGTGGATCATTGTCCTTTTAAAGTCCCTGGATGTGACATAGTATCCTTTCCATTTT 1767
Query 1610 CCAGCATCAGCAATTCAAATATGTTGGAAGCGTCAAGTCCTAGA-CAGAGTGATCGTTTT 1668
|||||||||||||||||||| ||||||||||||||||||||| | | |||| ||||||||
Sbjct 1768 CCAGCATCAGCAATTCAAATTTGTTGGAAGCGTCAAGTCCTACAAC-GAGTAATCGTTTT 1826
Query 1669 AAGTCTCATGACTGGATCCCCTCTCAGTTTCAGTCACCTCAAGTTTGGATTGATTCATAG 1728
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1827 AAGTCTCATGATTGGATCCCCTTTCAGTTTCAGTCACCTCAAGTTTGGATTGATTCATAG 1886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85441327590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5