BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906356

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20142.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) dom...   760    0.0  


> AT2G20142.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) domain 
family protein | chr2:8695374-8696643 FORWARD LENGTH=1032
Length=1032

 Score =  760 bits (411),  Expect = 0.0
 Identities = 457/480 (95%), Gaps = 0/480 (0%)
 Strand=Plus/Plus

Query  1    ATGTTGGTGAATGAAATAGCTCGGGAAATCGAAAACAAGCTGCTAAGAGCCTCACGAACA  60
            ||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||| 
Sbjct  476  ATGTTGGTGAATGGAATAGCTCGGGAAATCGAGAACAAACTGCTAAGAGCCTCAAGAACG  535

Query  61   AAGGTTATAATTGAGTGGTCTCTAGTCATCACAAACCTCATGTTGGAGATAGCTTCTTCT  120
            |||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct  536  AAGGTTATGATTGAGTGGTCTTTAGTCATCACCAACCTCATGTTGGAGATACCTTCTTCT  595

Query  121  GTTTTCGACCAGATCTCCTCTGCACATAAACCTTCATACGCATTGGCTGCAATGTCAATG  180
            |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct  596  GTTTTCGACCAGATCTCCTCTGCACATAAACCTTTATATGCATTGGCTGCAATGTCAATG  655

Query  181  TCATTGTTATCATGTCTACTTTGCATCATAGATCTCTTACACAAAGGCAGAGTTGAGAGA  240
            ||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||
Sbjct  656  TCATTGTTATCATGTCTACTTTGCATTGTAGATCTCTTACACAAAGGCAGAGTTGACAGA  715

Query  241  GTTGTGTGGAAGTGGACTTGGCCCATTCCTTGGTTTCACTATCAAACTCAAAGATCAAAC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  716  GTTGTGTGGAAGTGGACTTGGCCCATTCCTTGGTTTCACTATCAAACTCAAAGATCAAAC  775

Query  301  AGATTTGGTAGCTTTCCAGAGATGCTTGGCTTGGTTTGCGCCTTGTGCCAAACGACTATC  360
            ||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct  776  AGATTTGGTAGTTTTCCAGAGATGCTAGGCTTGGTTTGTGCCTTGTGCCAAACAACTATC  835

Query  361  ACTGCCGTTAACTATTCATTCATCACACGTAGAGATGACACTCCCATCAAATTCTCGGTT  420
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  836  ACTGCCGTTAACTATTCATTCATCACACGTAGAGATGATACTCCCATCAAATTCTCGGTT  895

Query  421  TGGCCAATCATGTTTGCGTTAGGTTTACTTTGTACTTTGTTGATCAAAAGATCTAGATAA  480
            |||||||||||||||||| ||||||||||||| ||||||||||| ||||||| |||||||
Sbjct  896  TGGCCAATCATGTTTGCGCTAGGTTTACTTTGCACTTTGTTGATTAAAAGATTTAGATAA  955



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5