BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906357

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20142.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) dom...   708    0.0  


> AT2G20142.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) domain 
family protein | chr2:8695374-8696643 FORWARD LENGTH=1032
Length=1032

 Score =  708 bits (383),  Expect = 0.0
 Identities = 418/435 (96%), Gaps = 2/435 (0%)
 Strand=Plus/Plus

Query  1    ATGAAACACGATGTGTTCATAAGTTTCAGG-GCCAAAGACACTCGTGACAACTTCGTGAG  59
            |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct  32   ATGAAACACGATGTGTTCATAAGTTTCAGGAG-CAAAGACACTCGTGACAACTTCGTAAG  90

Query  60   CCATCTCTGTGGCTGTCTACGTAGGAAGCGGATCAAAACCTTCTTATATGACGAACTACC  119
            ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  91   CCATCTCTGTGGCTGTCTACGTAGGAAACGGATCAAAACCTTCTTGTATGACGAACTACC  150

Query  120  GGCTGAAGAGAGATACGAAGAGTCGTTAAAAGCAATCGAAGTATCGAGAATTTCAGTCAT  179
             ||||| ||||| || |||||||||||||||||||| |||||||||| ||||||||||||
Sbjct  151  AGCTGACGAGAGGTATGAAGAGTCGTTAAAAGCAATTGAAGTATCGAAAATTTCAGTCAT  210

Query  180  TGTTTTCTCGGAAAACTTTGGGGATTCGAAATGGTGTTTAGATGAAGTTGTAGCCATCTT  239
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  211  TGTGTTCTCGGAAAACTTTGGGGATTCGAGATGGTGTTTAGATGAAGTTGTAGCCATCTT  270

Query  240  GAAATGCAAAGAAAAGTTTGGTCAGATTGTGATACCTGTCCTTTACCATGTGGATCCTCT  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  271  GAAATGCAAAGAAAAGTTTGGTCAGATTGTGATACCTGTCCTTTACCATGTTGATCCTCT  330

Query  300  CGACATTGAAAATCAGACAGGAAGTTTTGGAGATGCCTTTGCTAAGCGACGGGATATAGC  359
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  331  CGACATTGAAAATCAGACAGGAAGTTTTGGAGATGCCTTTGCTAAGCGACGGGATAAAGC  390

Query  360  CGAACAGCTTCAAGAATGGAAAGATGGTTTTACAGAAGCCATTAACCTCCCTGGATGGAG  419
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  391  CGAACAGCTTCAAGAATGGAAAGATAGTTTTACAGAAGCCATTAACCTCCCTGGATGGAG  450

Query  420  TACTGCCTATTTGAG  434
            |||||| ||||||||
Sbjct  451  TACTGCTTATTTGAG  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5