BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906360
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20110.2 | Symbols: | Tesmin/TSO1-like CXC domain-containin... 1958 0.0
> AT2G20110.2 | Symbols: | Tesmin/TSO1-like CXC domain-containing
protein | chr2:8684496-8687218 FORWARD LENGTH=2085
Length=2085
Score = 1958 bits (1060), Expect = 0.0
Identities = 1567/1787 (88%), Gaps = 134/1787 (7%)
Strand=Plus/Plus
Query 1 ATGGGAGAAGGTGAAGAAGGAGACAAATTCCCGCCAAAAACGGATGAGGTTATACAAGAG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGGAGAAGGTGAAGAAGGAGACAAATTCCCGCCAAAAACGGATGAGGTTACACAAGAG 60
Query 61 TCTATGAAGTCGGCGAGGCAACTCGATTTTACTGGTGTGGAGCATTCAC-A-GTCT-A-- 115
||||||||||||||||||||||||||||||||| | |||| | ||| | | || | |
Sbjct 61 TCTATGAAGTCGGCGAGGCAACTCGATTTTACT-G-GTGGTTC-TTC-CGATGT-TGAGC 115
Query 116 A-TCAAC-CTCCGGTTACATCTTCTTCGACGGCTGCTGCATCAATCCCTT---C------ 164
| || || ||| | | | ||||||||| |||||||||||||||||||| |
Sbjct 116 ATTC-ACACTCTAATCA-AGCTTCTTCGATGGCTGCTGCATCAATCCCTTCACCGATTGT 173
Query 165 GCCGGTTACGCGGCC---AATTACCACTCAGGCACGACCGGTTACAGCGACGGTGGCGAC 221
| ||||||||||||| |||||||| ||||| | ||| || |||||||||||||
Sbjct 174 GACGGTTACGCGGCCAATAATTACCAGTCAGG--C-ACC----AC--CGACGGTGGCGAC 224
Query 222 TCCGATTCCACCGCCGCCACAATCTCAGGG---CATCCTTCACGTCCCAATTAGACATCC 278
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 225 TCCGATTCCACCGCCGCCACAATCTCAGGGCATCATCCTTCACGTCCCAATTAGACATCC 284
Query 279 AGTTGACACTTGTTTCTTC-TCTT--TTG-TAAGGCCTG-TGGGGGAAGCTAGAGATGGA 333
| | | | | ||| | || || |||||||| | |||||| |||||||||||
Sbjct 285 -G-AGGC-C-CGAATCTCCGAATTCGATGCCAAGGCCTGCT-GGGGAAACTAGAGATGGA 339
Query 334 ACCCCTCAGAAGAAGAAACAGTGTAACTGTAAACACTCACGGTGCTTGAAGCTGTATTGT 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 ACCCCTCAGAAGAAGAAACAGTGTAACTGTAAACACTCACGGTGCTTGAAGCTGTATTGT 399
Query 394 GAATGCTTTGCATCTGGCTCTTATTGTGATGGTTGCAACTGTTTAAATTGTTTCAACAAC 453
||||| |||||||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 400 GAATGTTTTGCATCTGGCACTTACTGTGATGGTTGCAACTGTGTAAATTGTTTCAACAAC 459
Query 454 GTTGAAAATGAGCCAGCGAGACGAGAAGCTATTGGATCAACTCTGGAACGGAATCCGAAT 513
||||||||||| || ||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 460 GTTGAAAATGAACCTGCGAGACGACAAGCGGTTGAATCAACTCTGGAACGGAATCCGAAT 519
Query 514 GCGTTCAGGCCTAAGATTGCTGCTAGTCCACACGGCGGACGAGATAACAGGGAGGAGGTT 573
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 520 GCGTTCAGGCCAAAGATTGCTGCTAGTCCACATGGTGGACGAGATAACAGGGAGGAGGTT 579
Query 574 GGTGAAGTTGTGTTGTTAGGGAGACACAACAAAGGCTGTCACTGCAAGAAATCTGGATGT 633
||||| |||||| |||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 580 GGTGACGTTGTGATGTTAGCGAGACACAACAAAGGCTGTCACTGCAAGAAATCCGGATGT 639
Query 634 CTTAAGAAGTATTGTGAGTGTTTTCAAGCTAACATTCTTTGTTCTGAGAACTGCAAATGC 693
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 640 CTTAAGAAGTATTGTGAGTGCTTTCAAGCAAACATTCTTTGTTCTGAGAACTGCAAATGC 699
Query 694 TTGGATTGCAAAAACTTTGAAGGAAGTGAAGTTAGACAATCTCTCTTTCACGGTGAACAT 753
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 700 TTGGATTGCAAAAACTTTGAAGGGAGTGAAGTTAGACAATCTCTTTTTCACGGTGAACAT 759
Query 754 TCCAACAACGTGGCTTATCTTCAACACGCAAATGCTGCCATAACCGGAGCTATTGGTTCC 813
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 TCCCACAACTTGGCTTATCTTCAACACGCAAATGCTGCCATAACCGGAGCTATTGGTTCC 819
Query 814 TCTGGCTTTGCATCTGCTCCAGCTCCTAAGAGAAGGAAAGGTCAGGAGAttttttttAAC 873
||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 820 TCTGGCTTTGCATCTGCTCCACCTCCTAAGAGAAGGAAAGGTCAGGAGATTTTCTTCAAC 879
Query 874 CAAGGACCCAAAGATTCATCCACTCATAGGCTTGGCCAGGCAAATAGTGGAAGAACCACA 933
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 880 CAAGGAACCAAAGATTCATCCACTCATAGGCTTGGCCAGGCAAATAACGGAAGAACCACA 939
Query 934 TCTCCGAAAACTGGTTCTCATGCTGGAGGCAATGCGTCGTTAGGCCCATCCAAAGTTGTA 993
||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TCTTCGCAAACTGGTTCTCGTGCTGGAGGCAATGCGTCGTTAGGCCCATCCAAAGTTGTA 999
Query 994 TATAGGTCTCTTTTGGCTGACATAATTAAACCGAA-GGATGTGAAAGCACTCTGTTCTGT 1052
|||| |||||||||||| ||||||||||||| || ||||||||||||||| ||||||||
Sbjct 1000 TATAAGTCTCTTTTGGCAAACATAATTAAACC-AATGGATGTGAAAGCACTATGTTCTGT 1058
Query 1053 TCTGGTAT-CTGTAGCTGGGGAAGCTGCAAAGACATTAACAGAAGAAA-GGTTAGCAGAT 1110
|||||| | ||||||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 1059 TCTGGT-TGCTGTAGCTGGGGAAGCTGCAAAGACATTAACAGAA-AAACGGTTAGCAAAT 1116
Query 1111 CAGAAAGAAACTTCCGTAGCTTCTTCTGTGCAAGATCAAGGACACAG-CAATAATAAAGG 1169
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1117 CAGAAAGAAACTTCCGTAGCTTCTTCTGTGCAAGATCAAGGACAC-GTCAATAATAAAGC 1175
Query 1170 TACCGAGGGTGAAAAAGCTGCGAGTGGAA-ATCAAGCTGAGAAATCTGGTCCAGATGGCT 1228
| ||| ||| ||| | | || || | | || | | | ||||||||
Sbjct 1176 T---GAG----AAAT--CTG-GTTTAGAGGATT---C--A-AA-T--G--C-AGATGGCT 1213
Query 1229 CCAAAGGGAGGTCACTATCTCCAGAAACTTTGGCATTGATGTGTGACGAACGGGACACAA 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 CCAAAGGGAGGTCACTATCTCCAGAAACTTTGGCATTGATGTGTGACGAACGGGACACAA 1273
Query 1289 TGTTAATGGTTGCAGCTTCACCTAATTGTTCGGTGGAGCCTACCTCACAGCTTCCAGATG 1348
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |
Sbjct 1274 TGTTAATGGTTGCAGCTTCACCTAATTGTTCGGTGGAGCCTACGTCACAGCTACCAAACG 1333
Query 1349 GGCAAGACCAGGTTTATGCAGAACAAGAGAAAGTAATATTAACCAGGTTCCGTGACTGCC 1408
|||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||
Sbjct 1334 GGCAAGACCAGGTTTATGCAGAACAAGAAAAAGTAGTATTAACCAAGTTCCGTGACTGCC 1393
Query 1409 TTAACCGAATTATCTCCTGCGGAGAAGTAAAAG-------------------A-A-TCAA 1447
|||||||||| |||||||| ||||||||||||| | | ||||
Sbjct 1394 TTAACCGAATAATCTCCTGTGGAGAAGTAAAAGTTTTTTGTTTGTTTGTTGCAGAATCAA 1453
Query 1448 ATTGT-CTTATGTCAAGAATGGATCTAGATACACCTGTACACACTG-CTGTCAAAATCGA 1505
||||| || |||||||||||||||||||||||||||||||| || | |||||| ||||||
Sbjct 1454 ATTGTTCT-ATGTCAAGAATGGATCTAGATACACCTGTACAAAC-GACTGTCAGAATCGA 1511
Query 1506 CCCAGTGGTTGATCAAAGA-CCAGTTGCAAATGGAGTTTCACAAACCGCAAAGCAACCTT 1564
|||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 CCCAGTGGTTCAACAA-GCTCCAGTTGCAAATGGAGTTTCACAAACCGCAAAGCAACCTT 1570
Query 1565 CCCAGCTAACCacaacaacaa-aaaca-a-ca--acaa-caacaaca---a----ca-at 1610
||||||||| |||||||||| ||||| | | |||| | ||| | | || |
Sbjct 1571 CCCAGCTAAACACAACAACACCAAACACATCCTCACAAACTGCAA-ATGGAGTTTCACA- 1628
Query 1611 aac---aa--caaca-----a-c-aaccacaacaacaacaacaccaaacacaTCCTCACA 1658
||| || |||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1629 AACGGCAAAGCAACCTTCCCAGCTAACCACAACAACAACAACACCAAACACATCCTCACA 1688
Query 1659 AACTCATCTTCATAAAACTCCAGCTTTGTCTGAGAAGAAAGACCTCT 1705
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 AACTCATCTTCATAAAACTCCAGCTTTGTCTGAGAAGAAAGACCTCT 1735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84387116145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5