BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906386
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19940.1 | Symbols: | oxidoreductases, acting on the aldehy... 1984 0.0
> AT2G19940.1 | Symbols: | oxidoreductases, acting on the aldehyde
or oxo group of donors, NAD or NADP as acceptor;copper
ion binding | chr2:8612926-8616018 FORWARD LENGTH=1595
Length=1595
Score = 1984 bits (1074), Expect = 0.0
Identities = 1162/1206 (96%), Gaps = 0/1206 (0%)
Strand=Plus/Plus
Query 1 ATGAGTACTGCGTCAACTTTTAGTTCAATCCAAGGATGCTGGTTCAAGGGGGAAAGGAGA 60
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 120 ATGAGTACTGCGTCGGCTTTTAGTTCAATCCAAGGATGCTGGTTCAAGGGCGAAAGGAAA 179
Query 61 ATTCGTGTAGCTGATAAGCGAGTCAAGAAGCTTTCTTTGGGATCCCATGTGGCTTCTCCA 120
||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||| |||
Sbjct 180 ATTCGTGTAGCGGATAAGCGAGCCAAGAGGCTTACTTTGGGATCCCATGTGGCTTCGCCA 239
Query 121 TCTTCACTGAGCTTCAGAGTTTCAGCTAGTAGCTCTGCTAAACCTGAAAAGGATATTCGG 180
|||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||
Sbjct 240 TCTTCAATGAGCTTCAGAGTTTCAGCTAGTAGTTCTGTTAAACCTGAAAAGGATATTAGG 299
Query 181 ATTGGTCTTCTTGGTGCAAGTGGCTACACTGGTGCTGAGATCGTCAGGCTTCTAGCAAAC 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 300 ATTGGTCTTCTTGGTGCAAGTGGCTACACTGGTGCTGAGATCGTTAGGCTTCTTGCAAAT 359
Query 241 CATCCGCATTTCCAGGTCACTCTGATGACTGCTGATAGAAAAGCTGGCCAGTCAATGGAA 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 CATCCGCATTTCCAGGTCACTTTGATGACTGCTGATAGAAAAGCTGGCCAGTCAATGGAA 419
Query 301 AGCGTTTTCCCACACCTGAGAGCTCAAAAACTACCTAGTTTGATCTCGGTAAAGGATGCA 360
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 420 AGCGTTTTCCCACACCTGAGAGCTCAAAAACTACCTACTTTGGTCTCGGTAAAGGATGCA 479
Query 361 GATTTTTCTACTGTGGATGCTGTATTCTGCTGTTTGCCTCACGGAACAACCCAGGAAATC 420
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 480 GATTTTTCTACTGTGGATGCTGTATTCTGCTGTTTACCTCACGGAACAACTCAGGAAATC 539
Query 421 ATCAAGGAACTGCCTACTGCATTAAAAATTGTTGATCTTTCAGCGGACTTCCGGTTGCGT 480
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 540 ATCAAGGAACTGCCTACTGCATTGAAAATCGTTGATCTTTCAGCGGACTTCCGGTTGCGT 599
Query 481 AATATTGCAGAATATGAAGAATGGTATTGTCAGCCACACAAGGCAGTAGAGTTACAGAAA 540
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 600 AATATTGCAGAATATGAAGAATGGTATGGTCAGCCTCACAAGGCAGTAGAGTTACAGAAA 659
Query 541 GAAGTTGTATATGGTCTAACAGAGATACTAAGGGAGGACATAAAAAAGGCACGACTTGTT 600
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAAGTTGTGTATGGTCTAACAGAGATACTAAGGGAGGACATAAAAAAGGCACGACTTGTG 719
Query 601 GCTAACCCAGGCTGTTACCCTACTACGATTCAACTTCCTCTTGTTCCTTTAATAAAGGCA 660
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 720 GCTAACCCAGGCTGTTACCCGACTACGATTCAACTTCCTCTTGTTCCTTTACTAAAGGCA 779
Query 661 AATCTCATCAAACATGAAAACATTATTATCGATGCAAAATCTGGTGTTAGTGGAGCAGGA 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 780 AATCTCATCAAACATGAAAACATCATTATCGATGCAAAATCTGGTGTTAGTGGAGCAGGA 839
Query 721 CGTGGTGCTAAGGAGGCGAATCTTTACTCTGAGATAGCTGAAGGCATTTCTTCTTATGGT 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGTGGTGCTAAGGAGGCAAATCTTTACTCTGAGATAGCTGAAGGCATTTCTTCTTATGGT 899
Query 781 GTCACCCGGCATCGCCATGTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAATCA 840
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 900 GTCACCCGTCATCGCCATGTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCA 959
Query 841 AAAGTAACTGTCAGTTTTACGCCGCATCTCATGCCAATGATCCGTGGAATGCAATCGACT 900
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 960 AAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATGATCCGTGGAATGCAATCGACT 1019
Query 901 ATATATGTGGAAATGGCTCCCGGGGTTAGAACCGAAGACTTATACCATCAATTGAGGACG 960
|||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||
Sbjct 1020 ATATATGTGGAAATGGCTCCCGGGGTTAGAACCGAAGATTTACACCAGCAATTGAAGACG 1079
Query 961 TCTTATGAGGATGAAGAATTTGTCAAAGTGTTGGATGAAGGAGTTGTTCCTCGGACACAC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCTTATGAGGATGAAGAATTTGTCAAAGTGTTGGATGAAGGAGTTGTTCCTCGGACACAC 1139
Query 1021 AACGTTAGAGGATCCAACTATTGTCATATGAGTGTCTTTCCTGATCGAATCCCCGGAAGA 1080
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1140 AACGTTAGAGGATCCAACTATTGTCATATGAGTGTCTTTCCTGATCGAATTCCTGGAAGA 1199
Query 1081 GCTATCATAATCTCAGTGATTGATAATCTCGTGAAAGGAGCTTCAGGACAAGCATTGCAG 1140
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 1200 GCTATCATAATCTCAGTGATTGATAATCTTGTGAAAGGAGCTTCGGGACAAGCGTTGCAG 1259
Query 1141 AATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTTTC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTTTC 1319
Query 1201 CCTTAA 1206
||||||
Sbjct 1320 CCTTAA 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5